View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_low_2 (Length: 676)
Name: NF6857_low_2
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 181 - 676
Target Start/End: Complemental strand, 55337457 - 55336966
Alignment:
| Q |
181 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
280 |
Q |
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| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
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| Q |
281 |
atctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
379 |
Q |
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| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
55337258 |
T |
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| Q |
380 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
479 |
Q |
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| T |
55337257 |
tagtata-----tatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
55337163 |
T |
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| Q |
480 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
579 |
Q |
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| T |
55337162 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
55337063 |
T |
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| Q |
580 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgnnnnnnntgtcatcaataggacacataatttac |
676 |
Q |
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| T |
55337062 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgaaaaaaatgtcatcaataggacacataatttac |
55336966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 55337604 - 55337473
Alignment:
| Q |
1 |
tctaagctggaacaaaaacannnnnnnaatttgagacagaaaatatttgtctttgcaattgtgaacaagttttataacctgggaaaattgttttaatttc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337604 |
tctaagctggaacaaaaacatttttttaatttgagacagaaaataattgtctttgcaattgtgaacaagttttataacctgggaaaattgttttaatttc |
55337505 |
T |
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| Q |
101 |
ttataacatcttgaattattgtctattaattt |
132 |
Q |
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| T |
55337504 |
gtataacatcttgaattattgtctattaattt |
55337473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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