View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_low_5 (Length: 476)
Name: NF6857_low_5
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_low_5 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 221 - 472
Target Start/End: Original strand, 40765557 - 40765808
Alignment:
| Q |
221 |
gttacaatacttaccattttatttaaataattaacaaatctataaattcatatcacnnnnnnnnnnnngtagatggacaaaatgataaataattattgaa |
320 |
Q |
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| T |
40765557 |
gttacaatacttatcattttatttaaataattaacatatctataaattcatatcacttttttctttttgtagatggacaaaatggtaaataatcatcgaa |
40765656 |
T |
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| Q |
321 |
actcgcacccacaagtggaaggtttggcattcgaaccccggtcaacgcgttcgatctcacaattttgacatttttattagttgagttaagacttgtgaac |
420 |
Q |
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| T |
40765657 |
actcgcacccacaagtggaagattcggcgttcgaaccccggtcaacgcgttcgatctcacaatttcgacatttttattagttgagttaagacttgtgaat |
40765756 |
T |
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| Q |
421 |
aattcatatcacttttagtaatggtgaatctttgaaaatgattaaatatcat |
472 |
Q |
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| T |
40765757 |
aattcatatcacttttagtaatggtgaatctttgaaaatgattaaatatcat |
40765808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 40765414 - 40765530
Alignment:
| Q |
76 |
tgagtgaaacttgtttcggacacaaagcagaacaaaactcgcggcaataaacttacaacctctagtcgtggtagtaacagtaaactataaaagtaaacta |
175 |
Q |
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| T |
40765414 |
tgagtgaaacttgtttcggacacaaagcagaacaaaactcgcggcaataa-cttacaacctctagtcgtggtagtaacagtaaactataaaagtaaacta |
40765512 |
T |
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| Q |
176 |
ctctaatttagatgaaaa |
193 |
Q |
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| T |
40765513 |
ctctaatttagatgaaaa |
40765530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 40765351 - 40765394
Alignment:
| Q |
20 |
caagagccaccgtcgagatctcagttga---gtcgtcgtcgtgc |
60 |
Q |
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| T |
40765351 |
caagagccaccgtcgagatctcagttgagtcgtcgtcgtcgtgc |
40765394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 22121 - 22087
Alignment:
| Q |
380 |
caattttgacatttttattagttgagttaagactt |
414 |
Q |
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| T |
22121 |
caattttgacatttttattagttgagttaagactt |
22087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 10600305 - 10600360
Alignment:
| Q |
353 |
gaaccccggtcaacgcgttcgatctcacaattttgacatttttattagttgagtta |
408 |
Q |
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| T |
10600305 |
gaaccccggtcacagcgtttggcctaacaattttgacatttttattagttgagtta |
10600360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 1648213 - 1648177
Alignment:
| Q |
381 |
aattttgacatttttattagttgagttaagacttgtg |
417 |
Q |
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| T |
1648213 |
aattttgacatttttgctagttgagttaagacttgtg |
1648177 |
T |
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