View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6857_low_8 (Length: 290)
Name: NF6857_low_8
Description: NF6857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6857_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 272
Target Start/End: Original strand, 6170616 - 6170770
Alignment:
| Q |
117 |
ttcaacttgaaaatggagtaattggtttaagcagaaaagnnnnnnntacatggaggggnnnnnnnngtagctggaatgatttaccagaaattccaaagtg |
216 |
Q |
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| T |
6170616 |
ttcaacttgaaaatggaataattggtgtaagcagaaaagaaaaaa-tacatggaggggaaaagaaagtagctggaatgatttaccagaaattccaaagtg |
6170714 |
T |
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| Q |
217 |
ttaattgttttccaagttgaggtacaaggttctcaactaaatctaatgaaagaaga |
272 |
Q |
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| T |
6170715 |
ttaaatgtattccaagttgaggtacaaggttctcaactaaatctaatgaaagaaga |
6170770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 6170489 - 6170577
Alignment:
| Q |
28 |
ccttattagaagaactacatttaaattctggtttagtcaaaacaaattttagcacgacaagaattctttgcttgccttttctttcttat |
116 |
Q |
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| T |
6170489 |
ccttaatagaagaactccatttaaattctggtttagtcaaaacaaattttagcacgacaagaattctttgcttgccttttctttcttat |
6170577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 114 - 272
Target Start/End: Complemental strand, 35099176 - 35099018
Alignment:
| Q |
114 |
tatttcaacttgaaaatggagtaattggtttaagcagaaaagnnnnnnntacatggaggggnnnnnnnngtagctggaatgatttaccagaaattccaaa |
213 |
Q |
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| T |
35099176 |
tatttcaacttgaaaatggaataattgttgtaagcagaaaagaaaaaaatacaaggaggggaaaaaaaagtagctggaatgatttaccagaaattctaaa |
35099077 |
T |
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| Q |
214 |
gtgttaattgttttccaagttgaggtacaaggttctcaactaaatctaatgaaagaaga |
272 |
Q |
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| T |
35099076 |
gtgttaattgtattccaagttgaggtacaaagttctcaactaaatctaatgaaagaaga |
35099018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 35099296 - 35099208
Alignment:
| Q |
28 |
ccttattagaagaactacatttaaattctggtttagtcaaaacaaattttagcacgacaagaattctttgcttgccttttctttcttat |
116 |
Q |
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| T |
35099296 |
ccttaatagaagaactccatttaaattctggtttagtgaaaacaaattttagcacgaaaagaattctttgcttgccttttctttcttat |
35099208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35102169 - 35102202
Alignment:
| Q |
1 |
cttgctcatccatcaacaacaaccaagccttatt |
34 |
Q |
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| T |
35102169 |
cttgctcatccatcaacaacaaccaagccttatt |
35102202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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