View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6858_high_2 (Length: 345)
Name: NF6858_high_2
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6858_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 11311307 - 11310973
Alignment:
| Q |
4 |
aatgaaagtccatactttaagcttttcaaacgacatccacaatataatggcttgcgggtgattggatgtcaatgctttccttcactaaggcatcaaggga |
103 |
Q |
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| T |
11311307 |
aatgaaagtccatactttaagcttttcaaacgacatccacaatataatggcttgcgggtgattggatgtcaatgctttccttcactaaggcatcaaggga |
11311208 |
T |
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| Q |
104 |
agaataagttttctgcaaaaacttatccttgtatctttataggttacagtccaatgcacaaagggtacagatgtttggat-caaagaccaagcgtgttta |
202 |
Q |
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| T |
11311207 |
agaataagttttctgcaaaaacttatccttgtatctttataggttacagtccaatgcacaaagggtacatatgtttggatccaaagacaaagcgtgttta |
11311108 |
T |
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| Q |
203 |
catctctcgtcatgttgtttttgatgaaacgactttccctttcaagccatcaacaactgtaccatctactccaaatctagaacttaccgagtttcctaat |
302 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11311107 |
catctctcgtcatgttgtttttgatgaaacgattttccctttcaagccatcaacaattgtaccatctactccaaatctagaacttaccgagtttcctaat |
11311008 |
T |
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| Q |
303 |
gctgatgaatggttggactccaagtgatgtccatc |
337 |
Q |
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| T |
11311007 |
gctgatgaatggttggactccaagttatgtgcatc |
11310973 |
T |
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