View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_high_5 (Length: 298)

Name: NF6858_high_5
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_high_5
NF6858_high_5
[»] chr8 (2 HSPs)
chr8 (5-298)||(23135238-23135531)
chr8 (15-85)||(38345650-38345720)
[»] chr3 (5 HSPs)
chr3 (5-298)||(11894349-11894642)
chr3 (18-108)||(8278370-8278460)
chr3 (18-108)||(8307179-8307269)
chr3 (15-112)||(15479532-15479629)
chr3 (33-139)||(53611190-53611296)
[»] chr1 (1 HSPs)
chr1 (5-278)||(20282050-20282323)
[»] chr2 (5 HSPs)
chr2 (5-146)||(14656482-14656623)
chr2 (18-143)||(1027193-1027318)
chr2 (15-106)||(35138096-35138187)
chr2 (5-112)||(42406086-42406193)
chr2 (5-85)||(174413-174493)
[»] chr5 (3 HSPs)
chr5 (5-127)||(7810986-7811108)
chr5 (33-139)||(23942227-23942333)
chr5 (45-115)||(29910844-29910914)
[»] chr4 (2 HSPs)
chr4 (15-127)||(46787383-46787495)
chr4 (5-127)||(7590556-7590678)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 23135531 - 23135238
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23135531 agtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 23135432  T
Q  105 accaactgcggatggtatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtccatctccagcgaaccaacacctccagccgtccatc 204  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23135431 accaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtccacctccagcgaaccaacacctccagccgtccatc 23135332  T
Q  205 aaccagccgttgtctgccaacaaactcggtcaacccccacctccgatgagcctttaattcaaaacgtccaaaaaactaaagccgttaatatttc 298  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||    
T  23135331 aaccagccgttgtcagccaacaaactcggtcaacacccacctccgatgagcatttaattcaaaacgtccaaaaaggtaaagccgttactatttc 23135238  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 38345650 - 38345720
Alignment:
Q  15 gaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacga 85  Q
    ||||||||||| |||   |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||    
T  38345650 gaaattgatctcactgctccggtggttgggaaaatatgggttaacggacattggtacaaaattcaatacga 38345720  T

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Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 298
Target Start/End: Original strand, 11894349 - 11894642
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11894349 agtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 11894448  T
Q  105 accaactgcggatggtatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtccatctccagcgaaccaacacctccagccgtccatc 204  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11894449 accaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtccacctccagcgaaccaacacctccagccgtccatc 11894548  T
Q  205 aaccagccgttgtctgccaacaaactcggtcaacccccacctccgatgagcctttaattcaaaacgtccaaaaaactaaagccgttaatatttc 298  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||    
T  11894549 aaccagccattgtcagccaacaaactcggtcaacacccacctccgatgagcatttaattcaaaacgtccaaaaaggtaaagccgttactatttc 11894642  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 8278460 - 8278370
Alignment:
Q  18 attgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcacca 108  Q
    |||||| | ||||||| |||  |||| || |||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  8278460 attgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatttgcacca 8278370  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 8307269 - 8307179
Alignment:
Q  18 attgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcacca 108  Q
    |||||| | ||||||| |||  |||| || |||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  8307269 attgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatttgcacca 8307179  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 15479629 - 15479532
Alignment:
Q  15 gaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactg 112  Q
    ||||||||||| ||  | || || ||| |||| |||||||| || ||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  15479629 gaaattgatctcacacttccagttgtaaggaagatttgggtgaatggacattggtacaaaattcagtacgagggcctccatctaatatgcaccaactg 15479532  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 53611296 - 53611190
Alignment:
Q  33 ccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcggatggtatggtcacttgg 132  Q
    |||||||| || ||||||||||| || || ||||||||||| ||||| || || || |||||| | |||||||| ||||| ||||| || |||||| |||    
T  53611296 ccggtggtcggaaaaatttgggtgaatggtcattggtacaaggttcaatatgaaggcctccacttgatttgcacaaactgtggatgctacggtcacctgg 53611197  T
Q  133 gaagaaa 139  Q
    |||||||    
T  53611196 gaagaaa 53611190  T

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Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 20282050 - 20282323
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20282050 agtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagagtctccacctaatttgc 20282149  T
Q  105 accaactgcggatggtatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtccatctccagcgaaccaacacctccagccgtccatc 204  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  20282150 accaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtccacctccagcgaaccaacaccttcagccgtccatc 20282249  T
Q  205 aaccagccgttgtctgccaacaaactcggtcaacccccacctccgatgagcctttaattcaaaacgtccaaaaa 278  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  20282250 aaccagccgttgttagccaacaaactcggtcaacacccacctccgatgagcatttaattcaaaacgtccaaaaa 20282323  T

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Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 14656623 - 14656482
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  14656623 agtctgtgtggaaattgatctgactgtgccggtggtagggaaaatttgggtcaacggactttggtacaaagttcagtatgagggtctccacctaatttgc 14656524  T
Q  105 accaactgcggatggtatggtcacttgggaagaaactgctca 146  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  14656523 accaactgcggatgctatggtcacttgggaaggaactgctca 14656482  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 1027193 - 1027318
Alignment:
Q  18 attgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcggat 117  Q
    |||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |    
T  1027193 attgatctgactatgccggtcgtaggaaagatttgggtaaacggacattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcggtt 1027292  T
Q  118 ggtatggtcacttgggaagaaactgc 143  Q
    | || || ||||||||| | ||||||    
T  1027293 gttacgggcacttgggacggaactgc 1027318  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 35138187 - 35138096
Alignment:
Q  15 gaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcac 106  Q
    ||||||||||| ||| ||||||| || || ||||||||||| |||||||| ||||||||||| ||||||||||| || || || ||||||||    
T  35138187 gaaattgatctcactttgccggttgtcggtaaaatttgggttaacggacactggtacaaagtccagtacgagggactacatcttatttgcac 35138096  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 42406193 - 42406086
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    ||||||||  || ||||| || ||| |||| || || ||||| |||||||| || ||||| ||||||||| |||||||||||||||| |||||||| |||    
T  42406193 agtctgtgttgagattgacctcactctgccagtagtggggaagatttgggtaaatggacactggtacaaaattcagtacgagggtctgcacctaatatgc 42406094  T
Q  105 accaactg 112  Q
    ||||||||    
T  42406093 accaactg 42406086  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 174413 - 174493
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacga 85  Q
    ||||||||  ||||||||||| ||| | |||||||| |||||||| ||||| ||||| || |||||||| |||||||||||    
T  174413 agtctgtgttgaaattgatctcactgtcccggtggtggggaaaatatgggtgaacggtcactggtacaaggttcagtacga 174493  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 7810986 - 7811108
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    ||||||||  ||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||    
T  7810986 agtctgtgttgaaattgatcttactatgccggtagtaggaaaaatttgggttaacggccattggtacaaagtccagtatgagggtcttcacctaatttgc 7811085  T
Q  105 accaactgcggatggtatggtca 127  Q
    || | ||| ||||| || |||||    
T  7811086 acaagctgtggatgttacggtca 7811108  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 23942227 - 23942333
Alignment:
Q  33 ccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcggatggtatggtcacttgg 132  Q
    |||||||| || ||||||||||| || || ||||||||||| || ||||| || ||||||||  | |||||||| |  |  ||||| ||||||||| |||    
T  23942227 ccggtggtcggaaaaatttgggttaatggtcattggtacaaggtccagtatgaaggtctccatttgatttgcacaagttatggatgttatggtcacctgg 23942326  T
Q  133 gaagaaa 139  Q
    |||||||    
T  23942327 gaagaaa 23942333  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 29910844 - 29910914
Alignment:
Q  45 aaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcgg 115  Q
    |||||||||||||| || |||||||| ||||||||||| || ||||| || || |||||||| || |||||    
T  29910844 aaaatttgggtcaatggtcattggtataaagttcagtatgaaggtcttcatcttatttgcacaaattgcgg 29910914  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 46787495 - 46787383
Alignment:
Q  15 gaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcg 114  Q
    |||||||| || ||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||| | || || ||| ||||||| ||||||||||    
T  46787495 gaaattgaccttactgttccggtggtggggaaaatatgggtgaacggacattggtacaaggttcaatacaaagggctacacttaatttgtaccaactgcg 46787396  T
Q  115 gatggtatggtca 127  Q
    |||| || |||||    
T  46787395 gatgttacggtca 46787383  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 7590678 - 7590556
Alignment:
Q  5 agtctgtggggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc 104  Q
    ||||||||  || |||||||| ||  ||||||| || || |||||||||||||| ||||||||||||||| | |||||||| || || || |||||||||    
T  7590678 agtctgtgttgagattgatcttacggtgccggtagtgggtaaaatttgggtcaatggacattggtacaaaatacagtacgaaggacttcatctaatttgc 7590579  T
Q  105 accaactgcggatggtatggtca 127  Q
    || || || ||||| ||||||||    
T  7590578 actaattgtggatgttatggtca 7590556  T

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