View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6858_high_6 (Length: 294)
Name: NF6858_high_6
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6858_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 292
Target Start/End: Original strand, 33500646 - 33500910
Alignment:
| Q |
28 |
ccttagtgctgagaatagcatgttactattaattctatcttaaaagaatagttttgtaatcatcatttacaaggaaaagaaaattttaacaagaaattat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33500646 |
ccttagtgctgagaatagcatgttactattaattctatcttaaaacaatagttttgtaatcatcatttacaaggaaaagaaaattttaacaagaaattat |
33500745 |
T |
|
| Q |
128 |
accttgtcagccttggaaataagtatagaccatatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgttgggctg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33500746 |
accttgtcagccttggaaataagtatagaccatatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgttgggctg |
33500845 |
T |
|
| Q |
228 |
agacaatgctatccattgtagatttatcagaagccatattagatctattgatgtccatctcattg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
33500846 |
agacaatgctatccattgtagatttatcagaagccatattagatctattgattactatctcattg |
33500910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 55867765 - 55867859
Alignment:
| Q |
127 |
taccttgtcagccttggaaataagtatagaccatatctttaacattgctatgtttgctatctgcatcatctcatgtacagtgtacaatccatgtt |
221 |
Q |
| |
|
||||||||||| |||| ||||| ||| ||| ||||||||| |||||||||| |||| | |||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
55867765 |
taccttgtcagacttgaaaatatgtacagatcatatctttcacattgctatatttgatctctgcatcatctcatgaacagtgaacaatccttgtt |
55867859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University