View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_high_8 (Length: 270)

Name: NF6858_high_8
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_high_8
NF6858_high_8
[»] scaffold0062 (4 HSPs)
scaffold0062 (1-270)||(47030-47300)
scaffold0062 (1-270)||(71666-71933)
scaffold0062 (1-270)||(59556-59810)
scaffold0062 (144-213)||(45651-45720)
[»] chr2 (3 HSPs)
chr2 (1-270)||(15723109-15723376)
chr2 (1-270)||(15710644-15710898)
chr2 (23-65)||(37770721-37770763)
[»] chr8 (3 HSPs)
chr8 (1-270)||(18690369-18690624)
chr8 (22-65)||(30236208-30236251)
chr8 (21-61)||(10248637-10248677)
[»] chr5 (5 HSPs)
chr5 (21-106)||(7392070-7392155)
chr5 (21-65)||(8297425-8297469)
chr5 (23-106)||(7195278-7195360)
chr5 (1-61)||(17854151-17854212)
chr5 (24-64)||(31721637-31721677)
[»] chr4 (2 HSPs)
chr4 (21-106)||(53823460-53823545)
chr4 (21-65)||(48098290-48098334)
[»] chr7 (6 HSPs)
chr7 (1-61)||(11379211-11379271)
chr7 (21-65)||(8745110-8745154)
chr7 (21-65)||(44755584-44755627)
chr7 (22-65)||(36449042-36449085)
chr7 (24-65)||(6716816-6716857)
chr7 (21-65)||(42533332-42533376)
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-65)||(36664-36708)
[»] chr6 (3 HSPs)
chr6 (21-65)||(20701883-20701927)
chr6 (4-65)||(33968693-33968754)
chr6 (21-65)||(3880663-3880707)
[»] chr1 (2 HSPs)
chr1 (1-65)||(17033523-17033587)
chr1 (23-63)||(4651739-4651779)
[»] chr3 (4 HSPs)
chr3 (1-60)||(823520-823579)
chr3 (23-65)||(30935470-30935512)
chr3 (21-65)||(4464016-4464059)
chr3 (21-65)||(25647641-25647685)


Alignment Details
Target: scaffold0062 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 47030 - 47300
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgat 100  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47030 caatcttgtttggctgactatagtgtttctctggtgaaccgggggtgaggggtgcccttctgattagaccctgatgtctggtgaaccaatcacttttgat 47129  T
Q  101 tcgagaacgttagttagttttttagtccaagttcgtgcctctctaaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtat 200  Q
    |||||| ||| | | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47130 tcgagatcgtaaatcagttctttagttcaagttcgtgcctctctaaaataaacatggtttttcttatttttattgtatgaatccgtaacaaccaaagtat 47229  T
Q  201 gaacacatataaggggataat-gcatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 270  Q
    ||||||||||||||||||  | | ||||| ||||||||||||| |||||||||||||||  ||||||||||    
T  47230 gaacacatataaggggatggtggtatatattattatgtcaaactaaaaacgtatatacttaatacttaatt 47300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 71666 - 71933
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgat 100  Q
    |||||||||||| | |||||| |||||||||||||||||||  |||| ||||||||||||||||||||| |||| |||   |||||||||||||||||||    
T  71666 caatcttgtttggcggactatagtgtttctctggtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgat 71765  T
Q  101 tcgagaacgttagttagttttttagtccaagttcgtgcctctctaaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtat 200  Q
    |||||| ||| |||||||| |||  | |||||||||||||||   ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  71766 tcgagatcgtcagttagttctttgtttcaagttcgtgcctct---aaaaaaacatgatttttcttatttttattgtatgaatccgtaacaaccaaagtat 71862  T
Q  201 gaacacatataaggggataat-gcatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 270  Q
    |||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  71863 gaacacatataaggggatgatggtatatactaatatgtcaaacaaaaaacgtatatactatatacttaatt 71933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 59556 - 59810
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgat 100  Q
    |||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  59556 caatcttgtttggctgactatagtgtttctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgat 59655  T
Q  101 tcgagaacgttagttagttttttagtccaagttcgtgcctctctaaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtat 200  Q
    |||||| ||| | | |||| |||||| ||||||||||||||||               ||| ||||||||||||||||||||||||||||||||||||||    
T  59656 tcgagatcgtcaatcagttctttagttcaagttcgtgcctctc---------------tttccttatttttattttatgaatccgtaacaaccaaagtat 59740  T
Q  201 gaacacatataaggggataat-gcatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 270  Q
    |||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  59741 gaacacatataaggggatgatggtatatactattatgtcaaac-aaaaacgtatatactatatacttaatt 59810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 45651 - 45720
Alignment:
Q  144 taaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtatgaacacatataag 213  Q
    ||||| || ||||||||||||||| |||||| |||||| || ||||||||| ||| ||| ||||||||||    
T  45651 taaaaaaaccatggtttttcttatatttattgtatgaacccctaacaaccatagtgtgagcacatataag 45720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 15723109 - 15723376
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgat 100  Q
    |||||||||||| | |||||| |||||||||||||||||||  |||| ||||||||||||||||||||| |||| |||   |||||||||||||||||||    
T  15723109 caatcttgtttggcggactatagtgtttctctggtgaaccggaggtgtggggtgcccttctgattagactctgacgtctgatgaaccaatcacttttgat 15723208  T
Q  101 tcgagaacgttagttagttttttagtccaagttcgtgcctctctaaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtat 200  Q
    |||||| ||| |||||||| |||  | |||||||||||||||   ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  15723209 tcgagatcgtcagttagttctttgtttcaagttcgtgcctct---aaaaaaacatgatttttcttatttttattgtatgaatccgtaacaaccaaagtat 15723305  T
Q  201 gaacacatataaggggataat-gcatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 270  Q
    |||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  15723306 gaacacatataaggggatgatggtatatactaatatgtcaaacaaaaaacgtatatactatatacttaatt 15723376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 15710644 - 15710898
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgat 100  Q
    |||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  15710644 caatcttgtttggctgactatagtgtttctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgat 15710743  T
Q  101 tcgagaacgttagttagttttttagtccaagttcgtgcctctctaaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtat 200  Q
    |||||| ||| | | |||| |||||| ||||||||||||||||               ||| ||||||||||||||||||||||||||||||||||||||    
T  15710744 tcgagatcgtcaatcagttctttagttcaagttcgtgcctctc---------------tttccttatttttattttatgaatccgtaacaaccaaagtat 15710828  T
Q  201 gaacacatataaggggataat-gcatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 270  Q
    |||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  15710829 gaacacatataaggggatgatggtatatactattatgtcaaac-aaaaacgtatatactatatacttaatt 15710898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 37770763 - 37770721
Alignment:
Q  23 gtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||| |||| ||||||||||||||| |||||||    
T  37770763 gtgtttctctggtgtaccgagggtgaggggtgcccatctgatt 37770721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 18690369 - 18690624
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgat 100  Q
    |||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  18690369 caatcttgtttggctgactatagtgtttctctggtgaaccggaggtgaggggtgcccttctgattagacccagatgtctggtgaaccaatcacttttgat 18690468  T
Q  101 tcgagaacgttagttagttttttagtccaagttcgtgcctctctaaaataaacatggtttttcttatttttattttatgaatccgtaacaaccaaagtat 200  Q
    |||||| ||| | | |||| |||||| |||||||||||||||||               || ||||||||||||||||||||||||||||||||||||||    
T  18690469 tcgagatcgtcaatcagttctttagttcaagttcgtgcctctct---------------ttccttatttttattttatgaatccgtaacaaccaaagtat 18690553  T
Q  201 gaacacatataaggggataat-gcatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 270  Q
    |||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  18690554 gaacacatataaggggatgatggtatatactattatgtcaaacaaaaaacgtatatactatatacttaatt 18690624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 30236251 - 30236208
Alignment:
Q  22 ggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||    
T  30236251 ggtgtttctctggtggaccgggggtaaggggtgcccttctgatt 30236208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 10248677 - 10248637
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttct 61  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  10248677 tggtgtttctctggtgtaccgggggtgaggggtgtccttct 10248637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 7392155 - 7392070
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgattcgaga 106  Q
    ||||||||||||| || |||| ||||||||||||||||||||||| |  ||| | |||  ||| ||| ||||||||||||||||||    
T  7392155 tggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgaga 7392070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 8297425 - 8297469
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||    
T  8297425 tggtgtttctctagtgtaccgagggtgaggggtgcccttctgatt 8297469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 7195360 - 7195278
Alignment:
Q  23 gtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgattcgaga 106  Q
    |||||||||||||| |||  ||||||||||||||||||||||| | || | | |||  |||| || ||||||||||||||||||    
T  7195360 gtgtttctctggtgtacca-gggtgaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgaga 7195278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17854212 - 17854151
Alignment:
Q  1 caatcttgttt-gactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttct 61  Q
    ||||||||||| | ||| ||| |||||| |||||||| |||| |||||||||||||||||||    
T  17854212 caatcttgttttggctggctagggtgttcctctggtggaccgggggtgaggggtgcccttct 17854151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 31721637 - 31721677
Alignment:
Q  24 tgtttctctggtgaaccgtgggtgaggggtgcccttctgat 64  Q
    ||||||||||||| |||| |||| |||||||||||||||||    
T  31721637 tgtttctctggtggaccgggggtaaggggtgcccttctgat 31721677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 53823545 - 53823460
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgattagaccctgatgtcaagtgaaccaatcacttttgattcgaga 106  Q
    |||||||||||||||| ||||  |||||||||||||||||||||| |  | | | |||  ||| ||||||||||||||||||||||    
T  53823545 tggtgtttctctggtgtaccggaggtgaggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgaga 53823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 48098290 - 48098334
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    ||||||||||| |||| |||| ||||||| |||||||||||||||    
T  48098290 tggtgtttctcaggtgtaccgagggtgagaggtgcccttctgatt 48098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11379271 - 11379211
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttct 61  Q
    |||||||||||| ||||||| ||||||||||||||| |||| ||||  |||||||||||||    
T  11379271 caatcttgtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttct 11379211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 8745110 - 8745154
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||    
T  8745110 tggtgtttctctggtgcaccgagggtgaggggtggccttctgatt 8745154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 44755584 - 44755627
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  44755584 tggtgtttctctggtgtaccgtgg-tgaggggtgcccttctgatt 44755627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 36449042 - 36449085
Alignment:
Q  22 ggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    ||||||||||||||| | || |||||||||||||||||||||||    
T  36449042 ggtgtttctctggtggatcgggggtgaggggtgcccttctgatt 36449085  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 6716857 - 6716816
Alignment:
Q  24 tgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    ||||||||||||| |||| | |||||||||||||||||||||    
T  6716857 tgtttctctggtgtaccgagagtgaggggtgcccttctgatt 6716816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 42533376 - 42533332
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||||| | || |||||||||||||||| ||||||    
T  42533376 tggtgtttctctggtgcatcgggggtgaggggtgccctcctgatt 42533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 36664 - 36708
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||||| |||| | |||||||||||||||||||||    
T  36664 tggtgtttctctggtgtaccgagagtgaggggtgcccttctgatt 36708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 20701927 - 20701883
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||    
T  20701927 tggtttttctctggtgtaccgggggtgaggggtgcccttctgatt 20701883  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 33968754 - 33968693
Alignment:
Q  4 tcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||  || ||| |||||||||||||||||||| ||||  |||||| ||||||||||    
T  33968754 tcttgtttggttggctacggtgtttctctggtgaaccgagggtatggggtggccttctgatt 33968693  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 3880707 - 3880663
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||||  |||| ||||||| |||||||||||||||    
T  3880707 tggtgtttctctggtttaccgagggtgagaggtgcccttctgatt 3880663  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17033523 - 17033587
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||| ||||||| |||| |||| |||||||||| | ||  |||||||||||||||||    
T  17033523 caatcttgtttggctgactacggtgattctatggtgaaccgagagtagggggtgcccttctgatt 17033587  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 4651739 - 4651779
Alignment:
Q  23 gtgtttctctggtgaaccgtgggtgaggggtgcccttctga 63  Q
    |||||||||||||| |||| |||| ||||||||||||||||    
T  4651739 gtgtttctctggtgtaccgggggtaaggggtgcccttctga 4651779  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 823579 - 823520
Alignment:
Q  1 caatcttgtttgactgactatggtgtttctctggtgaaccgtgggtgaggggtgcccttc 60  Q
    |||||||||||| ||   |||||||||||||||||| ||||||||| | |||||||||||    
T  823579 caatcttgtttggcttgttatggtgtttctctggtggaccgtgggtaaagggtgcccttc 823520  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 30935512 - 30935470
Alignment:
Q  23 gtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||| |||| |||| ||||||||||||||||||    
T  30935512 gtgtttctctggtggaccgggggtaaggggtgcccttctgatt 30935470  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4464059 - 4464016
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    ||||||||||||| || |||| |||||||||||||||||||||||    
T  4464059 tggtgtttctctg-tgtaccgagggtgaggggtgcccttctgatt 4464016  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 25647641 - 25647685
Alignment:
Q  21 tggtgtttctctggtgaaccgtgggtgaggggtgcccttctgatt 65  Q
    |||||||||||||||| |||| | |||| ||||||||||||||||    
T  25647641 tggtgtttctctggtgtaccgggagtgaagggtgcccttctgatt 25647685  T

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