View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_high_9 (Length: 246)

Name: NF6858_high_9
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_high_9
NF6858_high_9
[»] chr2 (2 HSPs)
chr2 (23-241)||(12416350-12416568)
chr2 (23-241)||(12428410-12428628)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 12416350 - 12416568
Alignment:
Q  23 aaaacaagtctgcagcaaggaactaggtcaaagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggttt 122  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12416350 aaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggttt 12416449  T
Q  123 tttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaactat 222  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||    
T  12416450 tttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaactat 12416549  T
Q  223 tggatgtgatgtccatctc 241  Q
    ||||||  |||||||||||    
T  12416550 tggatgctatgtccatctc 12416568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 12428410 - 12428628
Alignment:
Q  23 aaaacaagtctgcagcaaggaactaggtcaaagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggttt 122  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12428410 aaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggttt 12428509  T
Q  123 tttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaactat 222  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||    
T  12428510 tttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaactat 12428609  T
Q  223 tggatgtgatgtccatctc 241  Q
    ||||||  |||||||||||    
T  12428610 tggatgctatgtccatctc 12428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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