View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6858_low_1 (Length: 551)
Name: NF6858_low_1
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6858_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 39508391 - 39508516
Alignment:
| Q |
46 |
aattatcaagcatttgatgaactgattcaaaaactttaacgaagaaaagaaaaataaagcatcacatattaagatgtaaaaagagatataattagaatac |
145 |
Q |
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| T |
39508391 |
aattatcaagcatttgatgcactgattcaaaaactttaacgaagaaaagaaaaataaagcatcacatattaagatgtaaaaagggatataattagaatac |
39508490 |
T |
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| Q |
146 |
accaacgcaaatacgaaaagaggaag |
171 |
Q |
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| T |
39508491 |
accaacgcaaatacgaaaagaggaag |
39508516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 394 - 470
Target Start/End: Original strand, 39508752 - 39508828
Alignment:
| Q |
394 |
catgttaaatgctcataaatgaacaattgcaaacaaaaatcacacctcattcggattaaactctacttgaaaggtac |
470 |
Q |
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| T |
39508752 |
catgttaaatgctcataaatgaacaattgcaaacaaaaatcatacctcattcggattaaactctacttgaaaggtac |
39508828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 39508666 - 39508700
Alignment:
| Q |
320 |
tatagctaggatactacactcatacatgcagattg |
354 |
Q |
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| T |
39508666 |
tatagctaggatactacactcatacatgcagattg |
39508700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 506
Target Start/End: Original strand, 39508865 - 39508903
Alignment:
| Q |
468 |
tacctttaaaactaaggaatgcatttgttgtaaattaga |
506 |
Q |
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| T |
39508865 |
tacctttaaaactaaggaatgcatttgttgtaaactaga |
39508903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 17062570 - 17062599
Alignment:
| Q |
12 |
aatatgcccttgggtaggctagatggcacc |
41 |
Q |
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| T |
17062570 |
aatatgcccttgggtaggctagatggcacc |
17062599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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