View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6858_low_10 (Length: 282)
Name: NF6858_low_10
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6858_low_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 47713057 - 47712776
Alignment:
| Q |
1 |
aaagagaagaggattgcactagcttatgagaagcttccgaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713057 |
aaagagaagaggattgcactagcttatgagaagcttccgaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctc |
47712958 |
T |
|
| Q |
101 |
attttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712957 |
attttaagtttcttcatgattgtatatctgatcattttgctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtct |
47712858 |
T |
|
| Q |
201 |
tgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtgagagtatcgcaaagaggattttt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47712857 |
tgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtgagagtatcgcgaagaggattttt |
47712776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 278
Target Start/End: Original strand, 19785467 - 19785706
Alignment:
| Q |
39 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttt |
138 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||||||| || || | | |||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
19785467 |
gaaggaagagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcatttt |
19785566 |
T |
|
| Q |
139 |
tctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttg |
238 |
Q |
| |
|
|||||||||| ||||| ||| || |||||||||||| ||||| | ||| || || || |||||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
19785567 |
gctgattgtttgaagaaggatcttcagtttttgaaatctgggttgcccaataaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttg |
19785666 |
T |
|
| Q |
239 |
atagggcgacattgttgtgtgagagtatcgcaaagaggat |
278 |
Q |
| |
|
|| | |||| | ||||||||||||| ||||||||||| |
|
|
| T |
19785667 |
atcgatcgactcttctgtgtgagagtattgcaaagaggat |
19785706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 19796120 - 19795919
Alignment:
| Q |
39 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttt |
138 |
Q |
| |
|
|||| ||||||||| ||||| ||| ||||||||||||||||| || |||| | || || |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
19796120 |
gaaggaagagaagaggattgcattagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttc |
19796021 |
T |
|
| Q |
139 |
tctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttg |
238 |
Q |
| |
|
|||||||||| ||||| ||| | ||||||||||||| |||||| ||| || || ||||||||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
19796020 |
gctgattgtttgaagaaggatctcgagtttttgaaatccgggtcgcccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttg |
19795921 |
T |
|
| Q |
239 |
at |
240 |
Q |
| |
|
|| |
|
|
| T |
19795920 |
at |
19795919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 15835427 - 15835226
Alignment:
| Q |
39 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttt |
138 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||||||| || || |||||||||||| |||||||||| |||||| ||||||| ||| |||||||| |
|
|
| T |
15835427 |
gaaggaagagaagaggattgccttggctaagaagcttgttgatcgatacaatcgtgaccctgattttaagttccttcataattgtatctctcatcatttt |
15835328 |
T |
|
| Q |
139 |
tctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttg |
238 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||| |||||| ||| ||| || ||||||||||| |||||||| || || || ||||||| |||| |
|
|
| T |
15835327 |
gctgattgtttgaagaaggatcttgagtttttgaaatctgggtcacccagaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttg |
15835228 |
T |
|
| Q |
239 |
at |
240 |
Q |
| |
|
|| |
|
|
| T |
15835227 |
at |
15835226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University