View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_low_12 (Length: 246)

Name: NF6858_low_12
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_low_12
NF6858_low_12
[»] chr2 (2 HSPs)
chr2 (23-241)||(12416350-12416568)
chr2 (23-241)||(12428410-12428628)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 12416350 - 12416568
Alignment:
Q  23 aaaacaagtctgcagcaaggaactaggtcaaagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggttt 122  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12416350 aaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggttt 12416449  T
Q  123 tttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaactat 222  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||    
T  12416450 tttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaactat 12416549  T
Q  223 tggatgtgatgtccatctc 241  Q
    ||||||  |||||||||||    
T  12416550 tggatgctatgtccatctc 12416568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 12428410 - 12428628
Alignment:
Q  23 aaaacaagtctgcagcaaggaactaggtcaaagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggttt 122  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12428410 aaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggttt 12428509  T
Q  123 tttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaactat 222  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||    
T  12428510 tttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaactat 12428609  T
Q  223 tggatgtgatgtccatctc 241  Q
    ||||||  |||||||||||    
T  12428610 tggatgctatgtccatctc 12428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University