View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6858_low_13 (Length: 238)
Name: NF6858_low_13
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6858_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 12416037 - 12416269
Alignment:
| Q |
11 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgacatgatctagtgcgt |
106 |
Q |
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| T |
12416037 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgt |
12416136 |
T |
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| Q |
107 |
tattaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
204 |
Q |
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| T |
12416137 |
tattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
12416236 |
T |
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| Q |
205 |
gcaaactgaaaaaacggaaacaagatcaccattc |
238 |
Q |
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| T |
12416237 |
gcaaactg-aaaaccggaaacaagatcaccattc |
12416269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 12428097 - 12428329
Alignment:
| Q |
11 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgacatgatctagtgcgt |
106 |
Q |
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| T |
12428097 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgt |
12428196 |
T |
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| Q |
107 |
tattaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
204 |
Q |
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| T |
12428197 |
tattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
12428296 |
T |
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| Q |
205 |
gcaaactgaaaaaacggaaacaagatcaccattc |
238 |
Q |
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| T |
12428297 |
gcaaactg-aaaaccggaaacaagatcaccattc |
12428329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12402229 - 12402298
Alignment:
| Q |
18 |
aagatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
82 |
Q |
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| T |
12402229 |
aagatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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