View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_low_14 (Length: 238)

Name: NF6858_low_14
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_low_14
NF6858_low_14
[»] scaffold0062 (3 HSPs)
scaffold0062 (19-238)||(47517-47736)
scaffold0062 (19-238)||(60056-60275)
scaffold0062 (19-238)||(72175-72394)
[»] chr8 (1 HSPs)
chr8 (19-238)||(18690866-18691085)
[»] chr2 (3 HSPs)
chr2 (19-238)||(15698605-15698824)
chr2 (19-238)||(15711144-15711363)
chr2 (19-238)||(15723622-15723841)


Alignment Details
Target: scaffold0062 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 47736 - 47517
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47736 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 47637  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47636 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 47537  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  47536 tcgcgaaaaatgattggctt 47517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 60275 - 60056
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  60275 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 60176  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  60175 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 60076  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  60075 tcgcgaaaaatgattggctt 60056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 72394 - 72175
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  72394 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 72295  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  72294 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 72195  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  72194 tcgcgaaaaatgattggctt 72175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 18691085 - 18690866
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18691085 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 18690986  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18690985 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 18690886  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  18690885 tcgcgaaaaatgattggctt 18690866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 15698824 - 15698605
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15698824 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 15698725  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15698724 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 15698625  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  15698624 tcgcgaaaaatgattggctt 15698605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 15711363 - 15711144
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15711363 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 15711264  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15711263 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 15711164  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  15711163 tcgcgaaaaatgattggctt 15711144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 15723841 - 15723622
Alignment:
Q  19 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15723841 ctttcttcagcttcgccacttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttttccatctccactatacacctccct 15723742  T
Q  119 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctctcacaccaatgtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15723741 cagagtgcccaaaataaaatggaattcttcgatgtcgtcgttgatcatctcagctggaaaatcctttaaattttttgggatatctttcacaccaatgtat 15723642  T
Q  219 tcgcgaaaaatgattggctt 238  Q
    ||||||||||||||||||||    
T  15723641 tcgcgaaaaatgattggctt 15723622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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