View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_low_2 (Length: 385)

Name: NF6858_low_2
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_low_2
NF6858_low_2
[»] chr5 (23 HSPs)
chr5 (16-210)||(22042553-22042746)
chr5 (210-379)||(29186168-29186343)
chr5 (210-360)||(24956755-24956911)
chr5 (210-360)||(24965218-24965374)
chr5 (209-377)||(20398527-20398701)
chr5 (210-377)||(20372805-20372978)
chr5 (210-377)||(23349968-23350141)
chr5 (209-360)||(43597955-43598112)
chr5 (209-360)||(43603447-43603604)
chr5 (209-360)||(43608939-43609096)
chr5 (210-360)||(1728068-1728224)
chr5 (209-360)||(28843939-28844096)
chr5 (210-360)||(28852550-28852706)
chr5 (210-379)||(31410890-31411065)
chr5 (210-379)||(31421789-31421965)
chr5 (210-318)||(19223555-19223663)
chr5 (320-377)||(40014981-40015040)
chr5 (213-312)||(41099739-41099838)
chr5 (320-360)||(36454733-36454773)
chr5 (323-360)||(20099569-20099606)
chr5 (320-353)||(37048448-37048481)
chr5 (320-360)||(15956900-15956940)
chr5 (320-360)||(36448355-36448395)
[»] chr7 (13 HSPs)
chr7 (210-379)||(10439937-10440112)
chr7 (210-360)||(4952306-4952462)
chr7 (210-360)||(12978455-12978611)
chr7 (210-360)||(18304301-18304457)
chr7 (210-360)||(13831500-13831656)
chr7 (210-360)||(13839531-13839687)
chr7 (210-306)||(30244775-30244871)
chr7 (210-271)||(4941581-4941642)
chr7 (210-312)||(30255413-30255514)
chr7 (210-312)||(30245568-30245670)
chr7 (210-304)||(21662993-21663088)
chr7 (320-358)||(43906204-43906242)
chr7 (320-361)||(39866422-39866463)
[»] chr4 (15 HSPs)
chr4 (210-379)||(52295604-52295780)
chr4 (210-379)||(27343581-27343756)
chr4 (210-379)||(12996476-12996651)
chr4 (210-360)||(8094191-8094347)
chr4 (210-360)||(8102997-8103153)
chr4 (210-360)||(4523589-4523745)
chr4 (210-305)||(21532274-21532369)
chr4 (210-305)||(12428448-12428543)
chr4 (210-283)||(10638328-10638400)
chr4 (210-304)||(33188766-33188859)
chr4 (265-312)||(12402907-12402954)
chr4 (210-311)||(3424331-3424432)
chr4 (319-379)||(10638421-10638481)
chr4 (320-360)||(19737928-19737968)
chr4 (320-375)||(10814330-10814385)
[»] scaffold0156 (1 HSPs)
scaffold0156 (210-379)||(35246-35421)
[»] chr8 (20 HSPs)
chr8 (210-351)||(17973565-17973712)
chr8 (210-360)||(30938282-30938438)
chr8 (210-360)||(25579721-25579877)
chr8 (210-360)||(39837471-39837627)
chr8 (208-343)||(4839708-4839849)
chr8 (210-349)||(17683716-17683861)
chr8 (210-349)||(17664560-17664705)
chr8 (209-360)||(39845514-39845671)
chr8 (210-360)||(1406982-1407138)
chr8 (210-379)||(26873493-26873669)
chr8 (210-379)||(26875943-26876119)
chr8 (210-312)||(4582204-4582306)
chr8 (210-271)||(6670711-6670772)
chr8 (320-358)||(15061257-15061295)
chr8 (320-364)||(12844052-12844097)
chr8 (320-353)||(22156912-22156945)
chr8 (320-353)||(32006839-32006872)
chr8 (320-352)||(20028329-20028361)
chr8 (320-364)||(25766187-25766231)
chr8 (320-364)||(25795681-25795725)
[»] chr3 (29 HSPs)
chr3 (210-383)||(14538490-14538670)
chr3 (209-365)||(50824351-50824513)
chr3 (209-365)||(50851347-50851509)
chr3 (210-379)||(27341224-27341400)
chr3 (210-360)||(41006556-41006712)
chr3 (210-360)||(41015336-41015492)
chr3 (210-360)||(8154553-8154709)
chr3 (210-360)||(9525343-9525499)
chr3 (210-358)||(9555019-9555173)
chr3 (210-379)||(2211239-2211414)
chr3 (209-305)||(28470187-28470283)
chr3 (210-304)||(17933655-17933749)
chr3 (210-274)||(17628265-17628329)
chr3 (210-318)||(17919199-17919307)
chr3 (210-309)||(21186747-21186846)
chr3 (212-318)||(43470510-43470615)
chr3 (210-303)||(16816176-16816268)
chr3 (214-312)||(18349560-18349658)
chr3 (210-312)||(8197659-8197761)
chr3 (210-308)||(30443-30541)
chr3 (320-378)||(13509315-13509373)
chr3 (210-309)||(18039011-18039110)
chr3 (320-358)||(14881238-14881276)
chr3 (320-360)||(13105558-13105598)
chr3 (320-360)||(13111706-13111746)
chr3 (320-360)||(48060645-48060685)
chr3 (320-358)||(14893069-14893107)
chr3 (320-364)||(9523684-9523728)
chr3 (320-352)||(14740071-14740103)
[»] scaffold0497 (1 HSPs)
scaffold0497 (210-379)||(10993-11167)
[»] chr6 (26 HSPs)
chr6 (209-360)||(5004060-5004217)
chr6 (210-360)||(25506450-25506606)
chr6 (210-351)||(13825703-13825850)
chr6 (209-364)||(25550294-25550455)
chr6 (210-375)||(5994699-5994871)
chr6 (210-360)||(30824438-30824594)
chr6 (212-377)||(25991852-25992023)
chr6 (210-379)||(33298085-33298259)
chr6 (210-360)||(23925335-23925492)
chr6 (210-360)||(11279837-11279993)
chr6 (209-360)||(35091585-35091742)
chr6 (210-318)||(15391568-15391676)
chr6 (210-312)||(13490193-13490295)
chr6 (209-262)||(5489132-5489185)
chr6 (210-271)||(11053702-11053764)
chr6 (323-377)||(25711862-25711916)
chr6 (269-311)||(26526666-26526708)
chr6 (319-379)||(5489055-5489115)
chr6 (320-360)||(12667456-12667496)
chr6 (320-360)||(28702806-28702846)
chr6 (210-271)||(30114444-30114505)
chr6 (320-377)||(25690879-25690936)
chr6 (320-377)||(25697672-25697729)
chr6 (320-352)||(1625001-1625033)
chr6 (320-360)||(18960917-18960957)
chr6 (320-360)||(20459375-20459415)
[»] chr2 (29 HSPs)
chr2 (210-360)||(14582925-14583081)
chr2 (210-360)||(15944466-15944622)
chr2 (210-360)||(15952981-15953137)
chr2 (210-360)||(35138593-35138749)
chr2 (210-360)||(35146929-35147085)
chr2 (210-360)||(41233753-41233909)
chr2 (210-360)||(38168266-38168422)
chr2 (210-315)||(17687358-17687463)
chr2 (208-305)||(20372283-20372380)
chr2 (210-360)||(42565838-42565994)
chr2 (210-360)||(42574462-42574618)
chr2 (238-379)||(35037884-35038031)
chr2 (210-318)||(44372705-44372813)
chr2 (210-318)||(44388616-44388724)
chr2 (210-318)||(20621518-20621626)
chr2 (210-318)||(25483601-25483709)
chr2 (210-318)||(25491207-25491315)
chr2 (209-312)||(27606608-27606710)
chr2 (210-312)||(42249418-42249520)
chr2 (210-317)||(35303737-35303844)
chr2 (210-312)||(24285696-24285798)
chr2 (210-312)||(34070567-34070669)
chr2 (333-383)||(17687307-17687357)
chr2 (212-312)||(26903296-26903396)
chr2 (210-271)||(24292372-24292433)
chr2 (320-360)||(18208-18248)
chr2 (320-360)||(36735439-36735479)
chr2 (320-353)||(20279260-20279293)
chr2 (320-377)||(11873790-11873849)
[»] chr1 (18 HSPs)
chr1 (210-360)||(31539954-31540110)
chr1 (210-360)||(31548523-31548679)
chr1 (210-360)||(35103973-35104129)
chr1 (210-360)||(3432799-3432955)
chr1 (210-379)||(32137644-32137819)
chr1 (210-383)||(41746578-41746758)
chr1 (210-312)||(29221451-29221553)
chr1 (210-312)||(21498861-21498963)
chr1 (210-318)||(44320149-44320257)
chr1 (212-310)||(51058353-51058450)
chr1 (320-379)||(13450139-13450198)
chr1 (320-360)||(47108478-47108518)
chr1 (320-360)||(1961742-1961782)
chr1 (320-360)||(18098481-18098521)
chr1 (320-360)||(20429459-20429499)
chr1 (320-364)||(20518385-20518429)
chr1 (320-352)||(39454485-39454517)
chr1 (320-360)||(44832475-44832515)
[»] scaffold0111 (1 HSPs)
scaffold0111 (210-383)||(33035-33214)
[»] scaffold0016 (1 HSPs)
scaffold0016 (210-375)||(23464-23636)
[»] scaffold0173 (1 HSPs)
scaffold0173 (210-375)||(823-994)
[»] scaffold0002 (1 HSPs)
scaffold0002 (210-351)||(121228-121375)
[»] scaffold0083 (1 HSPs)
scaffold0083 (210-360)||(15813-15970)
[»] scaffold0632 (1 HSPs)
scaffold0632 (210-379)||(4390-4566)
[»] scaffold0209 (1 HSPs)
scaffold0209 (210-352)||(1-149)
[»] scaffold0039 (1 HSPs)
scaffold0039 (210-318)||(40790-40898)
[»] scaffold0431 (1 HSPs)
scaffold0431 (210-305)||(139-234)
[»] scaffold0222 (1 HSPs)
scaffold0222 (210-318)||(20439-20547)
[»] scaffold0170 (1 HSPs)
scaffold0170 (210-306)||(7159-7255)
[»] scaffold0863 (1 HSPs)
scaffold0863 (210-312)||(335-437)
[»] scaffold0044 (2 HSPs)
scaffold0044 (210-312)||(65501-65603)
scaffold0044 (210-312)||(81749-81851)
[»] scaffold0015 (1 HSPs)
scaffold0015 (210-312)||(192528-192630)
[»] scaffold0048 (1 HSPs)
scaffold0048 (209-282)||(7622-7695)
[»] scaffold0991 (1 HSPs)
scaffold0991 (210-308)||(340-438)
[»] scaffold0389 (1 HSPs)
scaffold0389 (210-312)||(416-518)
[»] scaffold1487 (1 HSPs)
scaffold1487 (220-256)||(762-798)
[»] scaffold0514 (1 HSPs)
scaffold0514 (210-271)||(10912-10973)
[»] scaffold0323 (1 HSPs)
scaffold0323 (327-377)||(17619-17669)
[»] scaffold0167 (1 HSPs)
scaffold0167 (320-358)||(8084-8122)
[»] scaffold0458 (1 HSPs)
scaffold0458 (320-352)||(9201-9233)
[»] scaffold0206 (2 HSPs)
scaffold0206 (320-352)||(259-291)
scaffold0206 (320-352)||(9021-9053)
[»] scaffold0027 (1 HSPs)
scaffold0027 (320-360)||(23688-23728)
[»] scaffold0001 (1 HSPs)
scaffold0001 (320-364)||(4862-4906)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 22042553 - 22042746
Alignment:
Q  16 tgtgcacattgaagaagtataacaacactgcagagtagtaaaacaaaataaaattagcagttaggaaaactgaaaatatagaatacctgatatggaagat 115  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |    |  ||||||||||||| |||||||||||||||||||||||||||||||    
T  22042553 tgtgcacattgaagaagtataacaacagtgcagagtagtataacaacagtgcag-agcagttaggaaagctgaaaatatagaatacctgatatggaagat 22042651  T
Q  116 gtacagtttcaaaacctcccagaacttgtcttttaagcacatcacgatatccagccatttcaagtggaaagagtagttaaagatgatgtagttat 210  Q
    ||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22042652 gtacagtttcaaaacctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttat 22042746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 29186343 - 29186168
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      || |||||||||| |||||||||||| |||| ||  ||||||||||  |||||||||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggacccttttctctctttattttatttttatttcagt 29186168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 24956911 - 24956755
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  24956911 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24956812  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  24956811 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 24956755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 24965374 - 24965218
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  24965374 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24965275  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  24965274 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 24965218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 209 - 377
Target Start/End: Complemental strand, 20398701 - 20398527
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  20398701 atgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20398602  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    |||| |||||      ||||||||||||| |||||||||||  |||||||  ||| ||||||  | |||||||||    
T  20398601 gagaggttactttgaagtacctcattttttattccgagtcgaaccctcttctctcattattttctctttatttca 20398527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 210 - 377
Target Start/End: Complemental strand, 20372978 - 20372805
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  20372978 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20372879  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    ||| |||||      ||||||||||||| |||||||||||  |||||||  ||| ||||||  | |||||||||    
T  20372878 agaggttactttgaagtacctcattttttattccgagtcgaaccctcttctctcattattttctctttatttca 20372805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 210 - 377
Target Start/End: Complemental strand, 23350141 - 23349968
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||     
T  23350141 tgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaa 23350042  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    ||| |||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  | |||||||||    
T  23350041 agaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttca 23349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 209 - 360
Target Start/End: Complemental strand, 43598112 - 43597955
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  43598112 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43598013  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  43598012 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 43597955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 209 - 360
Target Start/End: Complemental strand, 43603604 - 43603447
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  43603604 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43603505  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  43603504 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 43603447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 209 - 360
Target Start/End: Complemental strand, 43609096 - 43608939
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  43609096 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43608997  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  43608996 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 43608939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 1728224 - 1728068
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||     
T  1728224 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaa 1728125  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  1728124 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 1728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 209 - 360
Target Start/End: Original strand, 28843939 - 28844096
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||    
T  28843939 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28844038  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  28844039 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 28844096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 28852550 - 28852706
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  28852550 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28852649  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  28852650 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 28852706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 31410890 - 31411065
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||| ||     
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      ||||||||||||| ||||  ||||||||||||||  |||||||| |  |||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattctcagtcgggccctcttctctctttatcttctttttatttcagt 31411065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 31421789 - 31421965
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||| ||     
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  310 agaagttac------gtacctcatttttg-attccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      |||||||||||||| || || |||| | |||||||  ||||||||||  ||||||| |||||    
T  31421889 agatgttactttgaagtacctcatttttgaatgccaagtctgaccctcttctctctttattttctttttatatcagt 31421965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 19223555 - 19223663
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||| ||||||||||| | ||||| ||| |||    
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  19223655 agaggttac 19223663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 40014981 - 40015040
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctcttt--cctctttatttagtttttatttca 377  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||  |||||||||||    
T  40014981 tacctcatttttgattccgagtcgggccctcttttctctctttattttctttttatttca 40015040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 312
Target Start/End: Complemental strand, 41099838 - 41099739
Alignment:
Q  213 catacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 312  Q
    |||||| |||||||||||||||||| |||||  |||| |||||  |||||| |||||||  ||| ||| | |||||||| | ||||||||||||| ||||    
T  41099838 cataccccaaattttgaccacttttatctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcggaga 41099739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 36454733 - 36454773
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  36454733 tacctcatttttgattccgagtcggaccctcttttctcttt 36454773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 20099606 - 20099569
Alignment:
Q  323 ctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  20099606 ctcatttttgattccgagtcggaccctcttttctcttt 20099569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 37048448 - 37048481
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctcttt 353  Q
    |||||||||||| |||||||||||||||||||||    
T  37048448 tacctcattttttattccgagtcgggccctcttt 37048481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 15956940 - 15956900
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  15956940 taccccatttttgattccgagtcgggcccgcttttctcttt 15956900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 36448355 - 36448395
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||| ||||||||||||||||||| |||||||| ||||||    
T  36448355 taccttatttttgattccgagtcggaccctcttttctcttt 36448395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 10439937 - 10440112
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 10440036  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      ||||||||||||| |||||||||| | |||||||| ||||||||||  |||||||||||||    
T  10440037 agaggttactttaaagtacctcattttttattccgagtcagaccctcttttctctttattttctttttatttcagt 10440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 4952462 - 4952306
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||     
T  4952462 tgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 4952363  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||||||||||    
T  4952362 agaggttactttgaagtacctcattttttattccgagtcggaccctctttcctcttt 4952306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 12978455 - 12978611
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 12978611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 18304457 - 18304301
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| ||| |||||||| |||||||| ||||||    
T  18304357 agaggttactttgaagtacctcattttttatttcgagtcggaccctcttttctcttt 18304301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 13831500 - 13831656
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  13831500 tgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13831599  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  13831600 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 13831656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 13839531 - 13839687
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  13839531 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13839630  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  13839631 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 13839687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 30244775 - 30244871
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcgg 306  Q
    ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||| ||||||  || ||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttcgg 30244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 4941642 - 4941581
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaa 271  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 30255413 - 30255514
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||| | ||| | ||||||||| ||||||  || |||||||||||    
T  30255413 tgtcatacc-caaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggcag 30255511  T
Q  310 aga 312  Q
    |||    
T  30255512 aga 30255514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 30245568 - 30245670
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  || ||||||||||||||||||||  ||| ||||||||||||||||||| | ||| | ||||||||| ||||||  || |||||||| ||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggaag 30245667  T
Q  310 aga 312  Q
    |||    
T  30245668 aga 30245670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 21663088 - 21662993
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtat-ttttaaagtcgggaattttcgtcgtttcatacgaaatttc 304  Q
    ||||||||| |||||||||| ||||||| ||| |  ||||||||||||||||||| |||||||| || || | |||||||||| | ||||||||||    
T  21663088 tgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttc 21662993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 43906204 - 43906242
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctct 358  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  43906204 tacctcatttttgattccgagtcgggccctcttttctct 43906242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 39866422 - 39866463
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttta 361  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  39866422 tacctcatttttggttccgagtcgggccctcttttctcttta 39866463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 52295604 - 52295780
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  52295604 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcag 52295703  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    |||  ||||      |||||||| ||||||||||||||||||||||||||  ||||||||||  |||||||||||||    
T  52295704 agagattactttgaagtacctcattttttgattccgagtcgggccctcttctctctttattttctttttatttcagt 52295780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 27343756 - 27343581
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||  ||||||||||  |||||||||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttattttctttttatttcagt 27343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 12996476 - 12996651
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||    
T  12996476 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtag 12996575  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      ||||||||||||| |||||||||| | |||||||  |||||| |||  |||||||||||||    
T  12996576 agaggttactttgaagtacctcattttttattccgagtcagtccctcttctctctttgttttctttttatttcagt 12996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 8094347 - 8094191
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  8094347 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8094248  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      |||||||||||||||||||||||||| | |||||| ||||||    
T  8094247 agaggttactttgaagtacctcatttttgattccgagtcggactctcttttctcttt 8094191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 8103153 - 8102997
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      |||||||||||||||||||||||||| | |||||| ||||||    
T  8103053 agaggttactttgaagtacctcatttttgattccgagtcggactctcttttctcttt 8102997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 4523745 - 4523589
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 4523589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 21532369 - 21532274
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 305  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcg 21532274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 12428543 - 12428448
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 305  Q
    ||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||| | | |||||||||  ||||| |||||||||||    
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcg 12428448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaatttt 283  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 33188766 - 33188859
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttc 304  Q
    ||||||||| ||||||||||| |||||| |||||  ||| || ||||||| ||||||||||||  | ||||||||||||||||| ||||||||||    
T  33188766 tgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttc 33188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 12402907 - 12402954
Alignment:
Q  265 ttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 312  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttcggcagaga 12402954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 311
Target Start/End: Original strand, 3424331 - 3424432
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||| || |||||||||   |||||| |||||||| || ||| |||| |  |||  ||||||||| || |||||||||||||||    
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcggcag 3424430  T
Q  310 ag 311  Q
    ||    
T  3424431 ag 3424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 10638421 - 10638481
Alignment:
Q  319 gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||||||||||||| |||||||||||| ||||||   ||||||||||  |||||||||||||    
T  10638421 gtacctcattttttattccgagtcggaccctctcctctctttattttctttttatttcagt 10638481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 19737968 - 19737928
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  19737968 tacctcatttttgattccgagtcggaccctcttttctcttt 19737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 10814330 - 10814385
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttattt 375  Q
    |||||||||||| |||||||||| | ||||||| |||||||||||  |||||||||    
T  10814330 tacctcattttttattccgagtcagaccctcttccctctttattttctttttattt 10814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 35421 - 35246
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      ||||||||||||| ||||||||||||||||||||  || |||||||  |||||||||||||    
T  35321 agaggttactttgaagtacctcattttttattccgagtcgggccctcttcgctttttattttctttttatttcagt 35246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 17973565 - 17973712
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctct 351  Q
    ||| |||||      ||||||||||||| |||||||||||||||||||    
T  17973665 agaggttactttgaagtacctcattttttattccgagtcgggccctct 17973712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 30938282 - 30938438
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 30938438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 25579877 - 25579721
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||  |||||||||||||||    
T  25579777 agaggttactttgaagtacctcattttttattccgagtcgaaccctctttcctcttt 25579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 39837627 - 39837471
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  39837627 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39837528  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  39837527 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 39837471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 4839849 - 4839708
Alignment:
Q  208 tatgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc 307  Q
    ||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  4839849 tatgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgac 4839750  T
Q  308 agagaagttac------gtacctcatttttgattccgagtcg 343  Q
    | |||||||||      |||||||||||||||||||| ||||    
T  4839749 aaagaagttactttgaagtacctcatttttgattccgtgtcg 4839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 210 - 349
Target Start/End: Complemental strand, 17683861 - 17683716
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||     
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccct 349  Q
    |||||||||      ||||||||||||| |||||||||||| ||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagtcggaccct 17683716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 349
Target Start/End: Complemental strand, 17664705 - 17664560
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| | ||     
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaa 17664606  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccct 349  Q
    |||||||||      ||||||||||||| |||||||||||| ||||    
T  17664605 agaagttactttgaagtacctcattttttattccgagtcggaccct 17664560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 209 - 360
Target Start/End: Complemental strand, 39845671 - 39845514
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  39845671 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39845572  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     ||| |||||      ||||||||||||| |  ||||||||| |||||||| ||||||    
T  39845571 aagaggttactttgaagtacctcattttttaaaccgagtcggaccctcttttctcttt 39845514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 1407138 - 1406982
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 1406982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 26873669 - 26873493
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||| ||     
T  26873669 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaa 26873570  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      |||||| | ||||||||||||||| ||||| ||||  ||||||||||  |||||||||||||    
T  26873569 agaggttactttaaagtaccttattttttgattccgagtagggccgtcttctctctttattttctttttatttcagt 26873493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 26876119 - 26875943
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||| ||     
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||       ||||||| ||||||||||||||| ||||| ||||  ||||||||||  |||||||||||||    
T  26876019 agaggttactttaaaatacctcattttttgattccgagtagggccatcttctctctttattttctttttatttcagt 26875943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 4582204 - 4582306
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||| |||||||||||||||||||||||  |||| |||||| ||| || |||||||  ||| ||| | |||| ||| | |||||||||||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttcggcag 4582303  T
Q  310 aga 312  Q
    |||    
T  4582304 aga 4582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 6670711 - 6670772
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacc-cattttattcgtatttttaaa 271  Q
    ||||||||| |||||||||||||||||| |||||  |||||  ||||||||||||||||||||    
T  6670711 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 6670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 15061295 - 15061257
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctct 358  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  15061295 tacctcattttttattccgagtcgggccctcttttctct 15061257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 12844052 - 12844097
Alignment:
Q  320 tacctcat-ttttgattccgagtcgggccctctttcctctttattt 364  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  12844052 tacctcatattttggttccgagtcgggccctcttccctctttattt 12844097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 22156945 - 22156912
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctcttt 353  Q
    ||||||||||||||||||||||||| ||||||||    
T  22156945 tacctcatttttgattccgagtcggaccctcttt 22156912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 32006839 - 32006872
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctcttt 353  Q
    |||||||||||| |||||||||||||||||||||    
T  32006839 tacctcattttttattccgagtcgggccctcttt 32006872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 20028361 - 20028329
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||| ||||||||||||||||||||||||    
T  20028361 tacctcatatttgattccgagtcgggccctctt 20028329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 25766187 - 25766231
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttattt 364  Q
    |||||||||||| |||||||||| | ||||||| |||||||||||    
T  25766187 tacctcattttttattccgagtcagaccctcttccctctttattt 25766231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 25795681 - 25795725
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttattt 364  Q
    |||||||||||| |||||||||| | ||||||| |||||||||||    
T  25795681 tacctcattttttattccgagtcagaccctcttccctctttattt 25795725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 210 - 383
Target Start/End: Complemental strand, 14538670 - 14538490
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc-a 308  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |    
T  14538670 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 14538571  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 383  Q
     ||| |||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  |||||||||||||||||    
T  14538570 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttcagtgttt 14538490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 365
Target Start/End: Original strand, 50824351 - 50824513
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  50824351 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50824450  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttattta 365  Q
    |||| |||||      ||||||||||||| |||||||||||| |||||||  |||||| ||||    
T  50824451 gagaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttcttta 50824513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 365
Target Start/End: Complemental strand, 50851509 - 50851347
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  50851509 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50851410  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttattta 365  Q
    |||| |||||      ||||||||||||| |||||||||||| |||||||  |||||| ||||    
T  50851409 gagaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttcttta 50851347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 27341400 - 27341224
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  27341400 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 27341301  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    | | |||||      |||||||| ||||| |||||||||| ||||||||| |||||||||||  ||| |||||||||    
T  27341300 aaaggttactttgaagtacctcatttttttattccgagtcaggccctcttccctctttattttctttctatttcagt 27341224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 41006556 - 41006712
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  41006556 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41006655  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  41006656 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 41006712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 41015336 - 41015492
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  41015336 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41015435  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  41015436 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 41015492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 8154709 - 8154553
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  8154709 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 8154610  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  8154609 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 8154553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 9525499 - 9525343
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  9525499 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9525400  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    | | |||||       |||||||||||| ||||||||||||||||||||| ||||||    
T  9525399 aaaggttactttaaaatacctcattttttattccgagtcgggccctcttttctcttt 9525343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 210 - 358
Target Start/End: Complemental strand, 9555173 - 9555019
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctct 358  Q
    | | |||||       |||||||||||| ||||||||||||||||||||| ||||    
T  9555073 aaaggttactttaaaatacctcattttttattccgagtcgggccctcttttctct 9555019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 2211239 - 2211414
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||     
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  310 agaag------ttacgtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |      | |  |||||||||||| |||||||||| |||||||||  ||||||||||  |||||||||||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccctcttctctctttattttctttttatttcagt 2211414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 28470283 - 28470187
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 305  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  28470283 atgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcg 28470187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 17933655 - 17933749
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttc 304  Q
    ||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||    
T  17933655 tgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttc 17933749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtc 274  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 17919199 - 17919307
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||  |||||||||  ||||| ||||||||||| | |    
T  17919199 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcgg 17919298  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  17919299 agaggttac 17919307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 21186747 - 21186846
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||| ||| |  ||| |||||||||||||| |||||||| || |||||||||| |||||| |||||||||||||||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttcggcag 21186846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 43470615 - 43470510
Alignment:
Q  212 tcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 311  Q
    ||||||| ||||||||||| |||||| |||||  |||||| |||||||||||||||||||| || |||||||  |||||||| |||||||||||||||||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  312 aagttac 318  Q
    | |||||    
T  43470516 aggttac 43470510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 16816268 - 16816176
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaattt 303  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| |||||||||  ||||| |||||||||    
T  16816268 tgtcatacc-caaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattt 16816176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 18349560 - 18349658
Alignment:
Q  214 atacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 312  Q
    ||||| ||||||||||| ||||||||||||  |||| ||||||||||||| ||||||| |||| ||| | |||||||| | ||||||||||||||||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttcggcagaga 18349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 8197761 - 8197659
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||| |||||| |||||||  ||| ||| | |||||||| | || ||||||||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttcggcag 8197662  T
Q  310 aga 312  Q
    |||    
T  8197661 aga 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 30541 - 30443
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||| || ||| |||||||  ||| ||| | |||||||| | ||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 30443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 13509373 - 13509315
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcag 378  Q
    |||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||    
T  13509373 tacctcatttttgattccgaatcgggccctcttccctctttattttctttttatttcag 13509315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 18039011 - 18039110
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||  |  |||||||||||||||||||||| || | || |||   |||| |||||| |||||||||| ||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttcagcag 18039110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 14881276 - 14881238
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctct 358  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  14881276 tacctcatttttgattccgagtcgggccctcttttctct 14881238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 13105598 - 13105558
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  13105598 tacctcatttttgattccgagtcggaccctcttttctcttt 13105558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 13111746 - 13111706
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  13111746 tacctcatttttgattccgagtcggaccctcttttctcttt 13111706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 48060685 - 48060645
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  48060685 tacctcattttttattccgagtcgggccctcttttctcttt 48060645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 14893107 - 14893069
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctct 358  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  14893107 tacctcatttttgattccgagtcggcccctcttttctct 14893069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 9523728 - 9523684
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttattt 364  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||    
T  9523728 tacctcatttttggtttcgagtcgggccctcttctctctttattt 9523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 14740103 - 14740071
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||| ||||||||||||||||||||||||    
T  14740103 tacctcatatttgattccgagtcgggccctctt 14740071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 10993 - 11167
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      |||||||| |||||||||||| ||||||||||||  ||||||||||  |||||||||||||    
T  11093 agaggttactttgaagtacctca-ttttgattccgaatcgggccctcttctctctttattttctttttatttcagt 11167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 209 - 360
Target Start/End: Original strand, 5004060 - 5004217
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  5004060 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 5004159  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  5004160 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 5004217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 25506606 - 25506450
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||       ||||||||||||||||||||||| |||||||||| ||||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagtcaggccctcttttctcttt 25506450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 13825703 - 13825850
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctct 351  Q
    ||| |||||      |||||||||||||||||||||||||||||||||    
T  13825803 agaggttactttgaagtacctcatttttgattccgagtcgggccctct 13825850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 209 - 364
Target Start/End: Original strand, 25550294 - 25550455
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25550294 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggca 25550393  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttattt 364  Q
    |||| |||||      ||||||||||||| |||||||||||| || ||||  ||||||||||    
T  25550394 gagaggttactttgaagtacctcattttttattccgagtcggaccatcttctctctttattt 25550455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 375
Target Start/End: Original strand, 5994699 - 5994871
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||     
T  5994699 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaa 5994798  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttattt 375  Q
    ||| |||||      |||||||| |||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  5994799 agaggttactttgaagtacctcattttttgattccgagtcgggccctcttccctctttgttttctttttattt 5994871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 30824594 - 30824438
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      |||||||||||||||||||||||||| | |||||| ||||||    
T  30824494 agaggttactttgaagtacctcatttttgattccgagtcggactctcttttctcttt 30824438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 212 - 377
Target Start/End: Original strand, 25991852 - 25992023
Alignment:
Q  212 tcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 311  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  312 aagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    | |||||      ||||||||||||| |||| ||||||| |||||||  ||||||||||| | |||||||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccctcttctctctttatttactctttatttca 25992023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 33298085 - 33298259
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  33298085 tgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 33298184  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    || ||||||      ||||||||||||| ||||||||| || |||| ||  ||||||||||  |||||||||||||    
T  33298185 ag-agttactttgaagtacctcattttttattccgagtaggacccttttctctctttattttatttttatttcagt 33298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 23925335 - 23925492
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||   |||||||||||| ||    
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      |||||||| |||||||||||||||| ||||||||| |||||||    
T  23925435 agatgttactttgaagtacctcattttttgattccgagtcaggccctcttccctcttt 23925492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 11279837 - 11279993
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 11279993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 209 - 360
Target Start/End: Complemental strand, 35091742 - 35091585
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  35091742 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 35091643  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
      || |||||      ||||||||||||| ||| ||| |||| |||||||| ||||||    
T  35091642 aggaggttactttgaagtacctcattttttatttcgaatcggaccctcttttctcttt 35091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 15391676 - 15391568
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||     
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaa 15391577  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  15391576 agaggttac 15391568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 13490193 - 13490295
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||| | ||||  |||||||||||||  ||||| || |||| |||||||    
T  13490193 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaatctcggcag 13490292  T
Q  310 aga 312  Q
    |||    
T  13490293 aga 13490295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 5489185 - 5489132
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgt 262  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  5489185 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 11053702 - 11053764
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacc-cattttattcgtatttttaaa 271  Q
    ||||||||| |||||||||||||||||| |||||  |||||  ||||||||||||||||||||    
T  11053702 tgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa 11053764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 25711862 - 25711916
Alignment:
Q  323 ctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    ||||||||||||||||||||||||||||||  ||||||||||  | |||||||||    
T  25711862 ctcatttttgattccgagtcgggccctcttctctctttattttctctttatttca 25711916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 26526708 - 26526666
Alignment:
Q  269 aaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 311  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagag 26526666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 5489115 - 5489055
Alignment:
Q  319 gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    |||| |||||||||||||| |||||| |||| || |||||||||||  |||||||||||||    
T  5489115 gtacttcatttttgattccaagtcggaccctgttccctctttattttctttttatttcagt 5489055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 12667496 - 12667456
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  12667496 tacctcatttttgattccgagtcggaccctcttttctcttt 12667456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 28702846 - 28702806
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  28702846 tacctcatttttgattccgattcgggccctcttttctcttt 28702806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 30114444 - 30114505
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacc-cattttattcgtatttttaaa 271  Q
    ||||||||| |||||||||||||||||| |||||  |||||  ||||||||||||||||||||    
T  30114444 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 30114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 25690879 - 25690936
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||  | |||||||||    
T  25690879 tacctcattttttattccgagtcggaccctcttctctctttattttctctttatttca 25690936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 25697672 - 25697729
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||  | |||||||||    
T  25697672 tacctcattttttattccgagtcggaccctcttctctctttattttctctttatttca 25697729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 1625001 - 1625033
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||| ||||||||||||||||||||||||    
T  1625001 tacctcatatttgattccgagtcgggccctctt 1625033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 18960957 - 18960917
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  18960957 tacctcattttttattccgagtcggaccctcttttctcttt 18960917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 20459415 - 20459375
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  20459415 tacctcattttttattccgaatcgggccctcttttctcttt 20459375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 14582925 - 14583081
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 14583081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 15944622 - 15944466
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  15944622 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15944523  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  15944522 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 15944466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 15953137 - 15952981
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 15952981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 35138593 - 35138749
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  35138593 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35138692  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  35138693 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 35138749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 35146929 - 35147085
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  35146929 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35147028  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  35147029 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 35147085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 41233909 - 41233753
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  41233909 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41233810  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  41233809 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 41233753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 38168422 - 38168266
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 38168266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 17687463 - 17687358
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17687364  T
Q  310 agaagt 315  Q
    ||||||    
T  17687363 agaagt 17687358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 20372380 - 20372283
Alignment:
Q  208 tatgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 305  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  20372380 tatgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcg 20372283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 42565994 - 42565838
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  42565994 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42565895  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  42565894 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 42565838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 42574618 - 42574462
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 42574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 238 - 379
Target Start/End: Original strand, 35037884 - 35038031
Alignment:
Q  238 ctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagagaagttac------gtacctcattttt 331  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||       ||||||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  332 gattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
     |||||||||| ||||||||| |||||||||||  |||||||||||||    
T  35037984 tattccgagtcaggccctcttccctctttattttctttttatttcagt 35038031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 44372705 - 44372813
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||     
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44372804  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  44372805 agaggttac 44372813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 44388616 - 44388724
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||     
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44388715  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  44388716 agaggttac 44388724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 20621518 - 20621626
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| || |||||||| ||     
T  20621518 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaa 20621617  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  20621618 agatgttac 20621626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 25483601 - 25483709
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||| |||    
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  25483701 agaggttac 25483709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 25491207 - 25491315
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||| |||    
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  25491307 agaggttac 25491315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 27606710 - 27606608
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    |||||||||  ||||||||||| ||||||||||||  ||| | |||||||||||| |||||||| |||||||||| ||||| ||| ||||||||||||||    
T  27606710 atgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttcggca 27606612  T
Q  309 gaga 312  Q
    ||||    
T  27606611 gaga 27606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 42249520 - 42249418
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||  |||||| ||||||| |||  ||| | |||||||| | |||||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttcggcag 42249421  T
Q  310 aga 312  Q
    |||    
T  42249420 aga 42249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 35303737 - 35303844
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||| | ||||||||    |||||| |||||||| |||||| |||| |  ||| ||||||||||||| |||||||||||||||    
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  310 agaagtta 317  Q
    ||| ||||    
T  35303837 agaggtta 35303844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 24285696 - 24285798
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||| |||  |||| |||||| |||||| |||||||   || ||||| |||||||| | |||||||||||| ||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttcggtag 24285795  T
Q  310 aga 312  Q
    |||    
T  24285796 aga 24285798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 34070669 - 34070567
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||| |||||||||||||  |||| |||||| |||||| |||||||  ||| ||| | |||||||| | || ||||||||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttcggcag 34070570  T
Q  310 aga 312  Q
    |||    
T  34070569 aga 34070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 17687357 - 17687307
Alignment:
Q  333 attccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 383  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  17687357 attccgagccgggccctctttcctctttattttctttttatttcagtgttt 17687307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 26903396 - 26903296
Alignment:
Q  212 tcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 311  Q
    |||||||  |||||||||||||||||||||||  |||| |||||| |||||| |||||||  ||  ||| | | |||||| | |||||||||||||||||    
T  26903396 tcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccgaaaatgtccatcgttttagacgaaatttcggcagag 26903297  T
Q  312 a 312  Q
    |    
T  26903296 a 26903296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 24292372 - 24292433
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaa 271  Q
    ||||||||| |||||||||||||||||||| |||  |||| |||||| |||||| |||||||    
T  24292372 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaa 24292433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 18248 - 18208
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  18248 tacctcatttttgattccgagtcggaccctcttttctcttt 18208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 36735439 - 36735479
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  36735439 tacctcatttttgattccgagtcggaccctcttttctcttt 36735479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 20279293 - 20279260
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctcttt 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  20279293 tacctcaattttgattccgagtcgggccctcttt 20279260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 11873790 - 11873849
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctcttt--cctctttatttagtttttatttca 377  Q
    |||||||||||| |||||||||||| ||||||||   ||||||||||  |||||||||||    
T  11873790 tacctcatttttcattccgagtcggaccctcttttctctctttattttctttttatttca 11873849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 31539954 - 31540110
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 31540110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 31548523 - 31548679
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  31548523 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31548622  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  31548623 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 31548679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 35104129 - 35103973
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||     
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 35103973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 360
Target Start/End: Complemental strand, 3432955 - 3432799
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  3432955 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 3432856  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  3432855 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 3432799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 32137819 - 32137644
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||| |||| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||     
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    | |||||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  | |||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttcagt 32137644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 383
Target Start/End: Complemental strand, 41746758 - 41746578
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc-a 308  Q
    ||||||| | |||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 383  Q
     ||| |||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||| |||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttgagtgttt 41746578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 29221553 - 29221451
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||| ||||||||   ||||| |||||||||||||||    
T  29221553 tgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggcag 29221454  T
Q  310 aga 312  Q
    |||    
T  29221453 aga 29221451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 21498963 - 21498861
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||  |||||| |||||||  ||| ||| | |||||||| | |||||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 21498864  T
Q  310 aga 312  Q
    |||    
T  21498863 aga 21498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 44320257 - 44320149
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||  |  |||||||||||||||||||||| || | || |||   ||||||||||| |||||||||| ||||    
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  310 agaagttac 318  Q
     || |||||    
T  44320157 ggaggttac 44320149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 51058450 - 51058353
Alignment:
Q  212 tcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcaga 310  Q
    ||||||| |||||||||| ||||||||| | | || |  ||||||||||||||||||||||  |||||||||||| |||||| |||||||||| |||||    
T  51058450 tcataccccaaattttgatcacttttctttgttct-attcattttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttcagcaga 51058353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 13450139 - 13450198
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||  |||||||||||||    
T  13450139 tacctcatttttgattccgagtcgggctctcttctctctttattttctttttatttcagt 13450198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 47108478 - 47108518
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  47108478 tacctcattttttattccgagtcgggccctcttttctcttt 47108518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 1961742 - 1961782
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  1961742 tacctcattttttattccgagtcggaccctcttttctcttt 1961782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 18098481 - 18098521
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  18098481 tacctcattttttattccgagtcggaccctcttttctcttt 18098521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 20429459 - 20429499
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    ||||||||||||||||||||||| | |||||||| ||||||    
T  20429459 tacctcatttttgattccgagtcagaccctcttttctcttt 20429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 20518385 - 20518429
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttattt 364  Q
    |||||||||||||| ||||||||||||| ||||  ||||||||||    
T  20518385 tacctcatttttgaatccgagtcgggccttcttctctctttattt 20518429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 39454485 - 39454517
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||||||||| ||||||||||||||||||    
T  39454485 tacctcatttttgaatccgagtcgggccctctt 39454517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 44832515 - 44832475
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  44832515 tacctcattttttattccgagtcggaccctcttttctcttt 44832475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 210 - 383
Target Start/End: Original strand, 33035 - 33214
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||     
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 383  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||   |||||||||  | ||||||||| |||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccctcttctttctttattttctctttatttcattgttt 33214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 375
Target Start/End: Original strand, 23464 - 23636
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgta-tttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||  |||||||||||| |    
T  23464 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggta 23563  T
Q  309 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttattt 375  Q
    |||| |||||      |||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  23564 gagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctctttgttttctttttattt 23636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 375
Target Start/End: Complemental strand, 994 - 823
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  994 tgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcag 895  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttattt 375  Q
    | | |||||       |||||||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  894 aaaggttactttgaaatacctcatttttgattccgagtcgggccctcttctctctttattttctttttattt 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 121228 - 121375
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctct 351  Q
    ||| |||||      |||  |||||||||||||||||||| |||||||    
T  121328 agaggttactttgaagtaaatcatttttgattccgagtcgagccctct 121375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 15813 - 15970
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctcttt 360  Q
    ||| |||||      |||||||| ||||||||||| |||| |||||||||| ||||||    
T  15913 agaggttactttgaagtacctcattttttgattccaagtcaggccctcttttctcttt 15970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 379
Target Start/End: Original strand, 4390 - 4566
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||   |||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||| |||    
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  310 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 379  Q
    ||| |||||      |||||||| ||||| ||||||||||||||||||||  ||||||||||  |||||||||||||    
T  4490 agaggttactttgaagtacctcatttttttattccgagtcgggccctcttctctctttattttctttttatttcagt 4566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 149 - 1
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  310 agaagttac------gtacctcatttttgattccgagtcgggccctctt 352  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||    
T  49 agaggttactttgaagtacctcattttttattccgagtcggaccctctt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 40898 - 40790
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||| |||||||| ||||||| ||| ||     
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaa 40799  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  40798 agaggttac 40790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 139 - 234
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 305  Q
    ||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||| | | |||||||||  ||||| |||||||||||    
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcg 234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 20547 - 20439
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||| |    |||| |||||| |||||| |||||||| || |||||||||| |||||| |||||||||||||||    
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  310 agaagttac 318  Q
    ||| |||||    
T  20447 agaggttac 20439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 7255 - 7159
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcgg 306  Q
    |||||||||  ||||||||||||||||||||| |  |||||||||||||| ||| |||||||| || |||||||||| |||||| ||||||||||||    
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgg 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 437 - 335
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||||||||||||| |||  |||| |||||| |||||| |||||||  ||| ||| | | |||||| | |||||||||||||||    
T  437 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttcggcag 338  T
Q  310 aga 312  Q
    |||    
T  337 aga 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 65603 - 65501
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| |||||||||  |||||||||||||  |||| |||||| |||||| |||||||  ||| ||| | |||||||| | |||||||||||||||    
T  65603 tgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 65504  T
Q  310 aga 312  Q
    |||    
T  65503 aga 65501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 81851 - 81749
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||| |||||| |||||||  ||| ||| | |||||||| | ||||||||| |||||    
T  81851 tgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattttggcag 81752  T
Q  310 aga 312  Q
    |||    
T  81751 aga 81749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 192528 - 192630
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    ||||||||| ||||||||||||||||||||||||  ||||  ||||| |||||| |||||||  ||| ||| | |||||||| | |||||||||| ||||    
T  192528 tgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcagcag 192627  T
Q  310 aga 312  Q
    |||    
T  192628 aga 192630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 7695 - 7622
Alignment:
Q  209 atgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattt 282  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||| ||    ||||||||||| |||||||    
T  7695 atgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 438 - 340
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 308  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||| |||||| |||||||  ||| ||| | | |||||| | ||||||||| ||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattttggca 340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 416 - 518
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 309  Q
    |||||||||  ||||||||||||||||||| ||   |||| |||||| |||||| |||||||  ||| ||| | |||||||| | |||||||||||||||    
T  416 tgtcataccctaaattttgaccacttttctttaattttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 515  T
Q  310 aga 312  Q
    |||    
T  516 aga 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 798 - 762
Alignment:
Q  220 caaattttgaccacttttctctatccttacccatttt 256  Q
    |||||||||||||||||||||||| ||||||||||||    
T  798 caaattttgaccacttttctctattcttacccatttt 762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 10973 - 10912
Alignment:
Q  210 tgtcatacctcaaattttgaccacttttctctatccttacc-cattttattcgtatttttaaa 271  Q
    ||||||||| |||||||||||||||||| |||||  |||||  ||||||||||||||||||||    
T  10973 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 10912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 17669 - 17619
Alignment:
Q  327 tttttgattccgagtcgggccctctttcctctttatttagtttttatttca 377  Q
    ||||| ||||||||||||||||||||  ||||||||||  |||||||||||    
T  17669 ttttttattccgagtcgggccctcttctctctttattttctttttatttca 17619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 8084 - 8122
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctct 358  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  8084 tacctcatctttgattccgagtcgggccctcttttctct 8122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 9233 - 9201
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||||||||| ||||||||||||||||||    
T  9233 tacctcatttttgaatccgagtcgggccctctt 9201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 291 - 259
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||| ||||||||||||||||||||||||    
T  291 tacctcatatttgattccgagtcgggccctctt 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 9053 - 9021
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctt 352  Q
    |||||||| ||||||||||||||||||||||||    
T  9053 tacctcatatttgattccgagtcgggccctctt 9021  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 23688 - 23728
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctcttt 360  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  23688 tacctcattttttattccgagtcggaccctcttttctcttt 23728  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 4862 - 4906
Alignment:
Q  320 tacctcatttttgattccgagtcgggccctctttcctctttattt 364  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||||    
T  4862 tacctcatttttgaatccgagtcgggcccttttctctctttattt 4906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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