View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6858_low_6 (Length: 306)

Name: NF6858_low_6
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6858_low_6
NF6858_low_6
[»] chr5 (5 HSPs)
chr5 (15-306)||(10298247-10298538)
chr5 (188-263)||(9747143-9747218)
chr5 (227-304)||(10290202-10290277)
chr5 (106-178)||(9747249-9747320)
chr5 (15-86)||(10290129-10290200)
[»] chr2 (3 HSPs)
chr2 (57-127)||(16021964-16022034)
chr2 (99-181)||(14117731-14117814)
chr2 (188-240)||(33599016-33599068)
[»] chr4 (2 HSPs)
chr4 (64-150)||(51978594-51978683)
chr4 (63-122)||(3929573-3929630)
[»] chr1 (3 HSPs)
chr1 (191-242)||(36033560-36033611)
chr1 (73-122)||(16119091-16119140)
chr1 (72-161)||(21623678-21623767)
[»] chr7 (2 HSPs)
chr7 (192-242)||(48522878-48522928)
chr7 (190-242)||(46392597-46392649)
[»] scaffold0187 (1 HSPs)
scaffold0187 (189-242)||(4567-4620)
[»] scaffold0062 (1 HSPs)
scaffold0062 (188-228)||(332-372)
[»] chr8 (1 HSPs)
chr8 (65-113)||(9706796-9706844)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 10298247 - 10298538
Alignment:
Q  15 catcatagtcaacaggtaaaaatattccgtccgttccttcttattgtcgttttaagattatttacacataataagaaaactagtaaatttcgttactttt 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10298247 catcatagtcaacaggtaaaaatactccgtccgttccttcttattgttgttttaatattatttacacataataagaaaactagtaaatttcgttactttt 10298346  T
Q  115 gatgaaatcatttctttttctattatacccttaactttttattatcttgttctatctacttatctctttgcaatattgacaaaataatagttaatgttgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10298347 gatgaaatcatttctttttctattatacccttaactttttattatcttgttctatctacttatccctttgcaatattgacaaaataatagttaatgttgc 10298446  T
Q  215 attaaaatttaaaaacaacaaataaatatgaaagaattcttgtgcagaagcgacacttaaaaaggaatgaggatttgggagggagtatgacc 306  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10298447 attaaaatttaaaaacaacaaataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggagagggagtatgacc 10298538  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 9747218 - 9747143
Alignment:
Q  188 tattgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaatatgaaagaattcttgtgcagaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||||||    
T  9747218 tattgacaaaataatagttaatgttgcattaaaatttaaaaacgacaaataagtatgaacgaattcttctgcagaa 9747143  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 10290202 - 10290277
Alignment:
Q  227 aaacaacaaataaatatgaaagaattcttgtgcagaagcgacacttaaaaaggaatgaggatttgggagggagtatga 304  Q
    |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||  |||||||||||||    
T  10290202 aaacaacaaataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggatt--ggagggagtatga 10290277  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 9747320 - 9747249
Alignment:
Q  106 gttacttttgatgaaatcatttctttttctattatacccttaactttttattatcttgttctatctacttatc 178  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||    
T  9747320 gttacttttgatgaaattatttctttttctataatacccttaa-tttttattatcttgttccatctatttatc 9747249  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 10290129 - 10290200
Alignment:
Q  15 catcatagtcaacaggtaaaaatattccgtccgttccttcttattgtcgttttaagattatttacacataat 86  Q
    |||||| ||||||||| ||||||| | ||| |||||||| ||||| ||||||||| ||||||||||||||||    
T  10290129 catcatggtcaacaggcaaaaatagtacgttcgttcctttttattttcgttttaaaattatttacacataat 10290200  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 16022034 - 16021964
Alignment:
Q  57 attgtcgttttaagattatttacacataataagaaaactagtaaatttcgttacttttgatgaaatcattt 127  Q
    |||||||||||||||||||||||||||| | ||||||| | ||||||| ||||||||| ||| ||| ||||    
T  16022034 attgtcgttttaagattatttacacatactgagaaaaccaataaattttgttactttttatggaattattt 16021964  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 14117814 - 14117731
Alignment:
Q  99 aaatttcgttacttttgatgaaatcatttcttttt-ctattatacccttaactttttattatcttgttctatctacttatctct 181  Q
    |||||| ||||||||||||||||| || ||||||| |||| |||| ||||| | ||||||||||| ||  ||||| ||||||||    
T  14117814 aaattttgttacttttgatgaaattatgtctttttcctataatactcttaagtatttattatcttatttcatctatttatctct 14117731  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 33599016 - 33599068
Alignment:
Q  188 tattgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaa 240  Q
    ||||||||||||||  ||||||||||||||||| ||| |||| || |||||||    
T  33599016 tattgacaaaataacggttaatgttgcattaaactttgaaaataataaataaa 33599068  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 51978594 - 51978683
Alignment:
Q  64 ttttaagattatttacacataataagaaaactagtaaatttcgttacttttgatgaaatcattt---ctttttctattatacccttaact 150  Q
    ||||||||||||| ||||||| | ||||||||| ||||||| |||||||||||||  || ||||    ||||||||| ||||||||||||    
T  51978594 ttttaagattattgacacatacttagaaaactaataaattttgttacttttgatggtattatttgtcatttttctataatacccttaact 51978683  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 3929573 - 3929630
Alignment:
Q  63 gttttaagattatttacacataataagaaaactagtaaatttcgttacttttgatgaaat 122  Q
    |||||||| ||||||||||||  ||||||||| | ||||||| |||| ||||||||||||    
T  3929573 gttttaagtttatttacacat--taagaaaaccaataaattttgttatttttgatgaaat 3929630  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 36033611 - 36033560
Alignment:
Q  191 tgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 242  Q
    ||||||||||||||||||| ||| |||||| || |||||||| |||||||||    
T  36033611 tgacaaaataatagttaatattgaattaaatttaaaaaacaataaataaata 36033560  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 16119140 - 16119091
Alignment:
Q  73 tatttacacataataagaaaactagtaaatttcgttacttttgatgaaat 122  Q
    ||||||||||||| |||||||  | ||||||| |||||||||||||||||    
T  16119140 tatttacacataacaagaaaaacattaaattttgttacttttgatgaaat 16119091  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 21623767 - 21623678
Alignment:
Q  72 ttatttacacataataagaaaactagtaaatttcgttacttttgatgaaatcatttctttttctattatacccttaactttttattatct 161  Q
    ||||||||||| |  ||||||||   ||||||| ||||||||||||||||   | ||||||||| | |||||||||| | ||||||||||    
T  21623767 ttatttacacaaaccaagaaaaccgataaattttgttacttttgatgaaagtgtgtctttttctttaatacccttaaatatttattatct 21623678  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 48522928 - 48522878
Alignment:
Q  192 gacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 242  Q
    |||||||||||| |||||||||||||||| ||||||||  | |||||||||    
T  48522928 gacaaaataataattaatgttgcattaaactttaaaaatgataaataaata 48522878  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 46392597 - 46392649
Alignment:
Q  190 ttgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 242  Q
    ||||||||||  |||||||||||||||| || ||| ||||| |||||||||||    
T  46392597 ttgacaaaatcctagttaatgttgcattgaactttgaaaacgacaaataaata 46392649  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 4567 - 4620
Alignment:
Q  189 attgacaaaataatagttaatgttgcattaaaatttaaaaacaacaaataaata 242  Q
    |||| ||| ||||||||||||||| ||| ||| |||||||||||||| ||||||    
T  4567 attgtcaagataatagttaatgttacataaaactttaaaaacaacaattaaata 4620  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 372 - 332
Alignment:
Q  188 tattgacaaaataatagttaatgttgcattaaaatttaaaa 228  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  372 tattgacaagacaataattaatgttgcattaaaatttaaaa 332  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 9706844 - 9706796
Alignment:
Q  65 tttaagattatttacacataataagaaaactagtaaatttcgttacttt 113  Q
    |||||| |||||||||||||  |||||||| | ||||||||||||||||    
T  9706844 tttaaggttatttacacataccaagaaaaccaataaatttcgttacttt 9706796  T

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