View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6858_low_7 (Length: 300)
Name: NF6858_low_7
Description: NF6858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6858_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 48833712 - 48833999
Alignment:
| Q |
1 |
tcatattttagagagactaacatatattatatatttatctatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctggtgtta |
100 |
Q |
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| T |
48833712 |
tcatattttagagagactaacatatattatatatttatttatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctggtgtta |
48833811 |
T |
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| Q |
101 |
taatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatcc |
200 |
Q |
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| T |
48833812 |
taatatcattggcatcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatcc |
48833911 |
T |
|
| Q |
201 |
atctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttttcaacggtgtctttgatacctaatcgtgat |
288 |
Q |
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| T |
48833912 |
atctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatcctgat |
48833999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 288
Target Start/End: Complemental strand, 48790434 - 48790198
Alignment:
| Q |
52 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
151 |
Q |
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| T |
48790434 |
tgggccaattggaagtttcatataggatttgatgtacgagctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagag |
48790335 |
T |
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| Q |
152 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
251 |
Q |
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| T |
48790334 |
tattatacaaagggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatt |
48790235 |
T |
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| Q |
252 |
tggtttttcaacggtgtctttgatacctaatcgtgat |
288 |
Q |
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| T |
48790234 |
tggtctatcgactgtgtctttgatacccaaccgtgat |
48790198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 52 - 287
Target Start/End: Complemental strand, 15825965 - 15825730
Alignment:
| Q |
52 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
151 |
Q |
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| T |
15825965 |
tgggccaactggaagtttcatataggatttgatgtacgagctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagag |
15825866 |
T |
|
| Q |
152 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
251 |
Q |
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| T |
15825865 |
tattatacaaagggtatatttctgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatt |
15825766 |
T |
|
| Q |
252 |
tggtttttcaacggtgtctttgatacctaatcgtga |
287 |
Q |
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| T |
15825765 |
tggtcgatctactgtttctttgatacctaatcgtga |
15825730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 48816738 - 48816499
Alignment:
| Q |
49 |
agctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgta |
148 |
Q |
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| T |
48816738 |
agctgggccaactggaagtttcatataggatttgatgtacgagctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgcc |
48816639 |
T |
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| Q |
149 |
gagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgg |
248 |
Q |
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| T |
48816638 |
gtgtactctacaaaggctacatttccgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttgg |
48816539 |
T |
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| Q |
249 |
atttggtttttcaacggtgtctttgatacctaatcgtgat |
288 |
Q |
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| T |
48816538 |
atttggtctgtcaacggtgtctttgatacctaatcgtgat |
48816499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 48808106 - 48807940
Alignment:
| Q |
121 |
tacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttacttta |
220 |
Q |
| |
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|||||| ||||||| ||||| | |||| | ||| | ||||||| |||||||| || || |||||||| || ||||| ||| | || ||||||||||||| |
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| T |
48808106 |
tacgatatagagaaacacaagtttcgtcgtgtactctacaaagc-tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttacttta |
48808008 |
T |
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| Q |
221 |
agactttctttgatgctggagagtttggatttggtttttcaacggtgtctttgatacctaatcgtgat |
288 |
Q |
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| T |
48808007 |
agactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgat |
48807940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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