View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6859_high_1 (Length: 706)
Name: NF6859_high_1
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6859_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 690
Target Start/End: Original strand, 18704619 - 18705317
Alignment:
| Q |
1 |
acaaagtgacaggaaaatatgtgtcaaggtatgtgagaatagattatctttcaaaaatcgtagagattttcactttatgtannnnnnnnatctgcaaaat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||| |
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| T |
18704619 |
acaaagtgacaggaaaatatgtgtgaaggtatgtgagaatagattatctttcaaaattggtatagattttcactttatgtattttttt-atctgcaaaat |
18704717 |
T |
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| Q |
101 |
tgtgagaa-tagattagctttaaaaaatggtagagattttcaccaccgtatgtacnnnnnnnatctgcaaactatgttttatcaaatgatttagtgt--t |
197 |
Q |
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| T |
18704718 |
tgtgagaaatagattagctttaaaaaatggtagagatttttacc---ggatgtactttttttatctgcaaactatgttttatcaaatgatttagtgtgtt |
18704814 |
T |
|
| Q |
198 |
ttggaaaactgttggattggtcgtggtatttttgagcttttatcataaagattcatgtatgtttgagctttcttaaactaactatgtaatacactacgaa |
297 |
Q |
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| T |
18704815 |
ttggaaaactgttggataggtcgtggtatgtttgagcttttatcataaagattcatgtatgtttgagctttcttaaactaactatgtaatacactacgaa |
18704914 |
T |
|
| Q |
298 |
cacttgcagattgaatgttataattacagactaaattgaaatgctttccatttattacactcatgtacctaattatttttgctgaaaatgtaatgtacaa |
397 |
Q |
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| T |
18704915 |
cacttgcagattgaatgttataattacagactaaatcaaaatgctttccatttattacactcatgtacctaactatttttgctgaaaatgtaatgtacaa |
18705014 |
T |
|
| Q |
398 |
attacagactgtatttaccgtgtgatttccgtattttgtggtgtagcaattttctagtgcattttatgatgcaaaaacatcacttatgt----------t |
487 |
Q |
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| T |
18705015 |
attacagactgtagttaccgtgtgatttccatattttgtggtgtagcaattttctagtgcattttatgatgcaaaaacatcgcttatgttcctacctact |
18705114 |
T |
|
| Q |
488 |
tctactgataattgttatctgttattttttacttccatattatttgttgttctgtatatgctggttgaatattttgtgcacattgattctgtgtgtttat |
587 |
Q |
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| T |
18705115 |
cctactgatacttgttatctgttattttttacttccatattatttgttgttgtgtatatgctggttgaatattttgtgcacattgattctgtgtgtttat |
18705214 |
T |
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| Q |
588 |
aatattctgaccttattactgttgtggtatgcagcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttg |
687 |
Q |
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| T |
18705215 |
aatattctgaccttatcactgttgtggtatgcagcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttg |
18705314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 620 - 690
Target Start/End: Complemental strand, 1755783 - 1755713
Alignment:
| Q |
620 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttgatg |
690 |
Q |
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| T |
1755783 |
agcaaagctggcgcaggccaaagggtattgattcacaagttaggagaaaattcaagggagttactttgatg |
1755713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 690
Target Start/End: Original strand, 35545581 - 35545644
Alignment:
| Q |
627 |
ctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttgatg |
690 |
Q |
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| T |
35545581 |
ctggcgcagaccaaagggtattgattcacgtgtgaggagaaagtttaagggatgtactttgatg |
35545644 |
T |
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