View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6859_high_5 (Length: 265)
Name: NF6859_high_5
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6859_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 54285330 - 54285510
Alignment:
| Q |
1 |
tattccttcgatttcttctccgttgactctaaattttgatggttcggtttatgggttctaagaatccccgttctcaatgggaatcgtcttctgctacttc |
100 |
Q |
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| T |
54285330 |
tattccttcgatttcttctccgttgactctaaattttgatggttcggtttatgggttctaagaatccccgttctcaatgggaatcgtcttctgctacttc |
54285429 |
T |
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| Q |
101 |
ctccatttcccccaaatttgagatcgaggattccattcaagatcaacatgctcctctcaacaagcgtcacaaagtttgtta |
181 |
Q |
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| T |
54285430 |
ctccatttcccccaaatttgagatcgaggattccattcaagatcaacatgctcctctcaacaagcgtcacaaagtttgtta |
54285510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 54285526 - 54285573
Alignment:
| Q |
201 |
aaactaataatattctttctattattatatattattgttgtttgattt |
248 |
Q |
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| T |
54285526 |
aaactaataatattctttcaattattatatattattgtagtttgattt |
54285573 |
T |
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