View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6859_high_6 (Length: 248)

Name: NF6859_high_6
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6859_high_6
NF6859_high_6
[»] chr3 (6 HSPs)
chr3 (18-248)||(11894115-11894345)
chr3 (18-234)||(8310663-8310877)
chr3 (121-248)||(23421449-23421576)
chr3 (61-239)||(3662622-3662800)
chr3 (193-248)||(38650155-38650210)
chr3 (22-104)||(15479787-15479869)
[»] chr1 (2 HSPs)
chr1 (18-248)||(20281816-20282046)
chr1 (28-116)||(30820283-30820371)
[»] chr8 (1 HSPs)
chr8 (18-248)||(23135535-23135765)
[»] chr2 (5 HSPs)
chr2 (18-242)||(14656633-14656857)
chr2 (18-242)||(1026946-1027170)
chr2 (25-248)||(35138201-35138424)
chr2 (61-239)||(39009492-39009670)
chr2 (22-248)||(42406197-42406423)
[»] scaffold0214 (1 HSPs)
scaffold0214 (65-248)||(5942-6125)
[»] chr5 (1 HSPs)
chr5 (73-239)||(7810807-7810973)
[»] chr6 (1 HSPs)
chr6 (61-239)||(13030065-13030243)
[»] scaffold0836 (1 HSPs)
scaffold0836 (128-177)||(2302-2351)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 11894115 - 11894345
Alignment:
18 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
11894115 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaactccaaagttgacaaaacaatt 11894214  T
118 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11894215 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 11894314  T
218 acaccctgaaaattgaaagaggtaagtttgc 248  Q
    |||||||||||||||||||||||||||||||    
11894315 acaccctgaaaattgaaagaggtaagtttgc 11894345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 8310877 - 8310663
Alignment:
18 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt 117  Q
    |||||| ||||| |||| ||||||||| || || || |||||||||||||||||    || ||||||||||||||||| || || || |||||||||||     
8310877 catcaccggaggcccttagttaatattcgaccattgtcttgcagtcacacactgaatgccagaatttgcatctccaaatgctaaggtggacaaaacaatc 8310778  T
118 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 217  Q
    ||||  |||||||| ||||| |||||| |||| |||||||| ||||| ||  |  |||| |||||||||||||||||||||||||| ||| | || ||||    
8310777 gtttcagtgagatttccagggctgaacctagtttactatgacgagagctttctcttagctatggcttctgctcttggccgccccattaagattgatacaa 8310678  T
218 acaccctgaaaattgaa 234  Q
    |||  ||||||||||||    
8310677 aca--ctgaaaattgaa 8310663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 23421449 - 23421576
Alignment:
121 tgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaaca 220  Q
    ||||| |||||||||||||||||| | |||||||||||||| || ||| |  |||| |||||||||||  | ||  | || ||||| |||||||||||||    
23421449 tgggtcagattcccaggtctgaaccttgtatactatgatgaaagcttccttttagcaatggcttctgcgatcggaagaccaatcaaagtcgacacaaaca 23421548  T
221 ccctgaaaattgaaagaggtaagtttgc 248  Q
    | |||||| |||||||||| || |||||    
23421549 cactgaaagttgaaagaggaaaatttgc 23421576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 3662800 - 3662622
Alignment:
61 gtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatg 160  Q
    ||||| ||||||||||| ||||||||||| ||| | |||||||||||    ||| ||||||||||  | || || || || || ||||| || |||||||    
3662800 gtcacccactggtcaccagaatttgcatcaccagaagccaaagttgaacggacagttgtttgggtacgttttcctggcctaaatttagtctattatgatg 3662701  T
161 agagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagagg 239  Q
    | || ||||| || || ||||| |||||| |||||||||| || ||||| ||||| || || || ||| ||||||||||    
3662700 aaagcttcttactggcaatggcctctgctattggccgcccgataaaggtagacactaatacactaaaagttgaaagagg 3662622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 38650210 - 38650155
Alignment:
193 ggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgc 248  Q
    |||||||| ||||| |||||||||||||| |||||| |||||||||| || |||||    
38650210 ggccgcccaatcaaagtcgacacaaacactctgaaagttgaaagaggaaaatttgc 38650155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 15479869 - 15479787
Alignment:
22 acgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagt 104  Q
    |||||||||||||||||||| |  || || || |||||||||||||| ||||| |  || ||||| |||||||| ||||||||    
15479869 acgggaggtccttggttaatttacgaccattgtcttgcagtcacacattggtccctcgagtttgcctctccaaatgccaaagt 15479787  T

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Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 20281816 - 20282046
Alignment:
18 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
20281816 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaatt 20281915  T
118 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20281916 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 20282015  T
218 acaccctgaaaattgaaagaggtaagtttgc 248  Q
    |||||||||||||||||||||||||||||||    
20282016 acaccctgaaaattgaaagaggtaagtttgc 20282046  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 30820283 - 30820371
Alignment:
28 ggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaat 116  Q
    ||||| |||||||| || ||||| ||| | |  ||| |||| |||||||| ||||||||||| |||||||||||| |||| | ||||||    
30820283 ggtccctggttaattttcgatcattgcttagatgtctcacattggtcaccggaatttgcatcaccaaacgccaaaattgaaacaacaat 30820371  T

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Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 23135765 - 23135535
Alignment:
18 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
23135765 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaatt 23135666  T
118 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
23135665 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagcaatggcttctgctcttggccgccccatcaaggtcgacacaa 23135566  T
218 acaccctgaaaattgaaagaggtaagtttgc 248  Q
    |||||||||||||||||||||||||||||||    
23135565 acaccctgaaaattgaaagaggtaagtttgc 23135535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 14656857 - 14656633
Alignment:
18 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt 117  Q
    |||||||||||| ||||||||||| ||||||||||||||  ||||||| |||||||| ||||||||||||||||| || || ||||| ||||||||||||    
14656857 catcacgggaggcccttggttaatctttgatcactgcctcacagtcacccactggtcgcctgaatttgcatctccgaatgctaaagtggacaaaacaatt 14656758  T
118 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 217  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||    
14656757 gtttgggttagattcccaggtctgaacttagtgtactatgatgagagtttcttgttagctatggcttctgctcttggccgccccatcaaagttgacacaa 14656658  T
218 acaccctgaaaattgaaagaggtaa 242  Q
    |||||||||||||||||||||||||    
14656657 acaccctgaaaattgaaagaggtaa 14656633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 1026946 - 1027170
Alignment:
18 catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt 117  Q
    |||||| ||||| |||||||||||||| || || || || ||||||||||||||| | ||  |||||||||||||||| || || || |||||||||||     
1026946 catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccataatttgcatctccaaatgctaaggtggacaaaacaatc 1027045  T
118 gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa 217  Q
    |||||||||||||  |||||  ||||| |||| |||||||||||||| ||  |  |||| ||||||||||||||||| |||||||| ||||| || | ||    
1027046 gtttgggtgagatatccagggttgaacctagtttactatgatgagagctttctcttagctatggcttctgctcttggtcgccccattaaggttgatagaa 1027145  T
218 acaccctgaaaattgaaagaggtaa 242  Q
    |||| |||||||||||| |||||||    
1027146 acacactgaaaattgaacgaggtaa 1027170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 35138424 - 35138201
Alignment:
25 ggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttggg 124  Q
    ||||| || |||||||| ||||||||||| || |||||  |||||||| | ||||||||||| |||||||| ||||| || |||||||||||||| ||||    
35138424 ggaggcccgtggttaatctttgatcactgtctcgcagtagcacactggactcctgaatttgcttctccaaatgccaaggtagacaaaacaattgtctggg 35138325  T
125 tgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccct 224  Q
    | ||||| |||||| | ||  | || || ||||||||||| ||| |  |||||||||| ||||||||||||||||| || || || ||||||||||| ||    
35138324 taagatttccaggtttaaatcttgtgtattatgatgagagcttcctattagccatggcatctgctcttggccgccctattaaagtagacacaaacactct 35138225  T
225 gaaaattgaaagaggtaagtttgc 248  Q
    |||||| ||| | ||||| |||||    
35138224 gaaaatcgaacgtggtaaatttgc 35138201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 39009492 - 39009670
Alignment:
61 gtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatg 160  Q
    ||||| ||||||||||| ||||||||||| ||| | |||||||||||    ||| ||||||||||  | || || || || || ||||| || |||||||    
39009492 gtcacccactggtcaccagaatttgcatcaccagaagccaaagttgaacggacagttgtttgggtacgttttcctgggctaaatttagtctattatgatg 39009591  T
161 agagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagagg 239  Q
    | || ||||| ||||| ||||| |||||| |||||||||| || ||||| ||||| || || || ||| ||||||||||    
39009592 aaagcttcttactagcaatggcctctgctattggccgcccgataaaggtagacactaatacactaaaagttgaaagagg 39009670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 42406423 - 42406197
Alignment:
22 acgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgttt 121  Q
    |||||||||||||||||||| |  || || || |||||||||||||| ||||| || || || || |||||||| |||||||| || | |||| | ||||    
42406423 acgggaggtccttggttaatttacgaccattgtcttgcagtcacacattggtcccccgagttcgcctctccaaatgccaaagtggaaagaacagtcgttt 42406324  T
122 gggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacac 221  Q
    ||||  | || |||||||| ||  |||| || || || || |||||  | ||||| ||||| || ||  ||||||| || ||||| || ||||| |||||    
42406323 gggtccgttttccaggtctaaatctagtctattacgacgaaagttttctcctagctatggcctcagcaattggccgaccaatcaaagttgacacgaacac 42406224  T
222 cctgaaaattgaaagaggtaagtttgc 248  Q
    ||||||| ||||| |||| || |||||    
42406223 cctgaaagttgaacgaggaaaatttgc 42406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 5942 - 6125
Alignment:
65 cacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatgagag 164  Q
    |||| |||||||| ||||||||||| || ||||| |||||||| | |||  ||||||||||  | || |||||  | |||||||| || |||||||| ||    
5942 cacattggtcaccggaatttgcatcacccaacgcaaaagttgaaagaacggttgtttgggtacgttttccaggcttaaacttagtttattatgatgaaag 6041  T
165 tttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgc 248  Q
    |||| |  | || |||||||||||  | ||||| || || ||||| ||||||||||| |||||| ||||||| |||||||||||    
6042 tttccttttggcaatggcttctgccataggccgtcctattaaggttgacacaaacacgctgaaagttgaaaggggtaagtttgc 6125  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 7810807 - 7810973
Alignment:
73 tcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgc 172  Q
    ||||| || |||||||||||| | |||||||| ||    ||||| |||||||||||||| | |||  ||||  |||| ||||| || ||||| ||| |||    
7810807 tcaccggagtttgcatctccagatgccaaagtggatcgcacaatagtttgggtgagatttctagggttgaatctagtctactacgacgagagcttcctgc 7810906  T
173 tagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagagg 239  Q
    | || |||||||| || ||||||||||| || || || ||||| ||||| |||||||||||||||||    
7810907 ttgctatggcttcagcacttggccgcccaataaaagtggacactaacacactgaaaattgaaagagg 7810973  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 13030243 - 13030065
Alignment:
61 gtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatg 160  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||    ||| ||||||||||  | || || || || || ||||| || |||||||    
13030243 gtcactcactggtcaccagaatttgcatcaccaaaagccaaagttgaacggacagttgtttgggtacgttttcctggcctaaatttagtctattatgatg 13030144  T
161 agagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagagg 239  Q
    | || ||||| || || ||||| |||||| |||||||||| || |||||  |||| || || || ||| ||||||||||    
13030143 aaagcttcttactggcaatggcctctgctattggccgcccgataaaggtatacactaatacactaaaagttgaaagagg 13030065  T

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Target: scaffold0836 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 2302 - 2351
Alignment:
128 gattcccaggtctgaacttagtatactatgatgagagtttcttgctagcc 177  Q
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2302 gatttccaggtctaaacttggtgtactatgatgaaagtttcttgctagcc 2351  T

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