View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6859_low_2 (Length: 492)
Name: NF6859_low_2
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6859_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 39108566 - 39109039
Alignment:
| Q |
18 |
cctttctcaattcaacagagaaaaaacaacactggtggctcacaaaccgtaaagtaaacctctaaatatttcaccttaaattcttgttttgttttttcat |
117 |
Q |
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| T |
39108566 |
cctttctgaattcaacagagaaaaaacaacactggtggctcacaaaccgtaaggtaaacctctaaatatttcaccttaaattcttgttttgttttttcat |
39108665 |
T |
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| Q |
118 |
tctcaaaacatgtctgaatannnnnnnnnnnnnnnnnnatagattgttgagaaatatatcaaagatgcaagaacactcattgcaacacaagaacgaaacg |
217 |
Q |
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| T |
39108666 |
tctcaaaacatgtctgaatattttttgtttttgtttt-atagattgttgagaaatatatcaaagatgcaagaacactcattgcaacacaagaacgaaacg |
39108764 |
T |
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| Q |
218 |
agattgtttcagctataagtcttctagactcagctttagctatttctccaagttcagatcaagccctagagatgaaagcaagatctttgctctatttgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39108765 |
agattgtttcagctataagtcttctagactcagctttagctatttctccaagttcagatcaagccctagagatgaaagcaagatctttgctctatttgag |
39108864 |
T |
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| Q |
318 |
aagattcaaagacgtagcaaatatgcttcaagattatattccaagtttgaaaatggctaatgatgattctggctctgtttcttcttcttctgatggttct |
417 |
Q |
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| T |
39108865 |
aagattcaaagacgtagcaaatatgcttcaagattatattccaagtttgaaaatggctaatgatgattctggctctgtttcttcttcttctgatggttct |
39108964 |
T |
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| Q |
418 |
tctcaacagttttcaagagaaggtgtgaagttactttcttcatcggattcctctgctccagatcagagctacttc |
492 |
Q |
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| T |
39108965 |
tctcaacagctttcaagagaaggtgtgaagttactttcttcatcggattcctctgctccagatcagagctacttc |
39109039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 408
Target Start/End: Complemental strand, 44708239 - 44707989
Alignment:
| Q |
158 |
agattgttgagaaatatatcaaagatgcaagaacactcattgcaacacaagaacgaaacgagattgtttcagctataagtcttctagactcagctttagc |
257 |
Q |
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||||||| |||||||| || ||||| ||| ||| | || ||||||||||||| | |||||| |||||||| | | |||||| ||| |||||||||| |
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| T |
44708239 |
agattgtggagaaatacataaaagacgcacgaagcttaatagcaacacaagaacagagcgagatcctttcagctttgaatcttctcgacgcagctttagc |
44708140 |
T |
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| Q |
258 |
tatttctccaagttcagatcaagccctagagatgaaagcaagatctttgctctatttgagaagattcaaagacgtagcaaatatgcttcaagattatatt |
357 |
Q |
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| T |
44708139 |
tatatcaccgcgtttggatcaagctcttgagctaagagctaggtcattgctttacctaagaagattcaaagatgttgctgatatgcttcaagactacatt |
44708040 |
T |
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| Q |
358 |
ccaagtttgaaaatggctaatgatgattctggctctgtttcttcttcttct |
408 |
Q |
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| T |
44708039 |
ccgagtttgagaatgactaatgaagatccttcctctggttcttcttcttct |
44707989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 47057663 - 47057730
Alignment:
| Q |
314 |
tgagaagattcaaagacgtagcaaatatgcttcaagattatattccaagtttgaaaatggctaatgat |
381 |
Q |
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| T |
47057663 |
tgagaaggttcaaggatgttgcagatatgcttcaagactatattcctaatttgaaaatggcaaatgat |
47057730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 13720402 - 13720336
Alignment:
| Q |
303 |
tttgctctatttgagaagattcaaagacgtagcaaatatgcttcaagattatattccaagtttgaaa |
369 |
Q |
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| T |
13720402 |
tttgctctatttgagaaggttcgaagatgtaacaaatatgcttcaggatgatataccatgtatgaaa |
13720336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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