View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6859_low_3 (Length: 346)

Name: NF6859_low_3
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6859_low_3
NF6859_low_3
[»] chr3 (4 HSPs)
chr3 (1-335)||(11015120-11015454)
chr3 (4-335)||(11005557-11005888)
chr3 (4-334)||(11024133-11024463)
chr3 (34-335)||(47451529-47451836)
[»] chr4 (36 HSPs)
chr4 (50-321)||(48852825-48853099)
chr4 (75-307)||(45371731-45371963)
chr4 (74-307)||(48147370-48147609)
chr4 (137-335)||(48156058-48156262)
chr4 (192-337)||(49043795-49043940)
chr4 (74-307)||(45365877-45366116)
chr4 (219-331)||(49038511-49038623)
chr4 (264-335)||(7790441-7790512)
chr4 (64-182)||(48705170-48705288)
chr4 (70-307)||(48903119-48903359)
chr4 (260-321)||(7773468-7773529)
chr4 (260-321)||(7878740-7878801)
chr4 (70-162)||(49043997-49044089)
chr4 (140-242)||(43596153-43596255)
chr4 (264-335)||(7908663-7908734)
chr4 (264-334)||(7813838-7813908)
chr4 (263-307)||(48864395-48864439)
chr4 (195-303)||(49048216-49048323)
chr4 (268-335)||(7771760-7771827)
chr4 (264-334)||(7800998-7801068)
chr4 (261-307)||(45384549-45384595)
chr4 (263-335)||(48863625-48863697)
chr4 (158-321)||(50666561-50666733)
chr4 (213-321)||(7237386-7237500)
chr4 (74-155)||(7765804-7765885)
chr4 (121-234)||(45384634-45384747)
chr4 (57-251)||(37826709-37826909)
chr4 (264-303)||(7766003-7766042)
chr4 (211-250)||(7878048-7878087)
chr4 (264-307)||(48861649-48861692)
chr4 (74-155)||(7786626-7786707)
chr4 (264-321)||(7786825-7786882)
chr4 (126-242)||(50250454-50250572)
chr4 (202-255)||(50669378-50669431)
chr4 (266-334)||(7823332-7823400)
chr4 (273-321)||(37826633-37826681)
[»] chr6 (3 HSPs)
chr6 (74-307)||(21015992-21016225)
chr6 (72-181)||(21979420-21979529)
chr6 (267-307)||(21979285-21979325)
[»] chr5 (5 HSPs)
chr5 (74-308)||(179220-179463)
chr5 (77-321)||(9119928-9120181)
chr5 (255-307)||(29688481-29688533)
chr5 (263-307)||(42561990-42562034)
chr5 (77-160)||(29696401-29696484)
[»] chr8 (3 HSPs)
chr8 (108-303)||(4962180-4962385)
chr8 (262-307)||(4031583-4031628)
chr8 (51-162)||(4031711-4031822)
[»] chr1 (5 HSPs)
chr1 (269-330)||(24367531-24367592)
chr1 (129-321)||(24340634-24340829)
chr1 (129-321)||(24352999-24353194)
chr1 (262-321)||(24310575-24310634)
chr1 (262-321)||(24416137-24416196)
[»] chr7 (1 HSPs)
chr7 (262-321)||(48884183-48884242)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 11015454 - 11015120
Alignment:
Q  1 tcctggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015454 tcctggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctct 11015355  T
Q  101 tttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaaccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015354 tttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaaccta 11015255  T
Q  201 tagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015254 tagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattc 11015155  T
Q  301 gtcttgggttaaaactcttgtcctatctattgatg 335  Q
    |||||||||||||||||||||||||||||||||||    
T  11015154 gtcttgggttaaaactcttgtcctatctattgatg 11015120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 11005888 - 11005557
Alignment:
Q  4 tggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctctttt 103  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  11005888 tggattggtgaagtatactcacttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctctttt 11005789  T
Q  104 cgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatag 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||||    
T  11005788 cgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccatatggttttgatcatgaacctatag 11005689  T
Q  204 attgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtc 303  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  11005688 attgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtc 11005589  T
Q  304 ttgggttaaaactcttgtcctatctattgatg 335  Q
    ||||  |||  |||||||| ||||||||||||    
T  11005588 ttggactaaggctcttgtcttatctattgatg 11005557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 11024463 - 11024133
Alignment:
Q  4 tggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctctttt 103  Q
    |||||| || |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||| |||||||||||||||||||    
T  11024463 tggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatcccacagtagggacactctttaatgggaatattcattggttctctttt 11024364  T
Q  104 cgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatag 203  Q
    ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||| |    
T  11024363 cgcaatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatgg 11024264  T
Q  204 attgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtc 303  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||    
T  11024263 attgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtgtaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtc 11024164  T
Q  304 ttgggttaaaactcttgtcctatctattgat 334  Q
    ||||  ||| |||||||||||||||||||||    
T  11024163 ttggactaagactcttgtcctatctattgat 11024133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 335
Target Start/End: Complemental strand, 47451836 - 47451529
Alignment:
Q  34 ttatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgtt 133  Q
    |||||||||| ||  ||||||||| | |||||||  |||||| |||||| ||||| |||||||  ||||||| |||||| |||| ||| ||||||||| |    
T  47451836 ttatatgaattcatgtgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatgaatgttattgct 47451737  T
Q  134 ggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttc 233  Q
    |  ||||||||| ||||||| ||| |||| ||  || |||| ||||||| ||||||| |||||||||   |||||| ||||||| |||||||||||||||    
T  47451736 gcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttc 47451637  T
Q  234 taagtctatgggctatgg------aggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatc 327  Q
    | |||||| ||| | |||      |  |||  | ||||||||||||||| |||||||||||||||||  ||||||||||||  || |||||||| ||  |    
T  47451636 ttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcc 47451537  T
Q  328 tattgatg 335  Q
    ||||||||    
T  47451536 tattgatg 47451529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 321
Target Start/End: Original strand, 48852825 - 48853099
Alignment:
Q  50 gatgatcccaaagtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggat---gttattgttggctttgatttag 146  Q
    |||||||||| |||||||  ||| ||||||||| |||||||||||||  ||||||| ||||||||| ||||| ||   |||||||| | ||||||||||     
T  48852825 gatgatcccagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaa 48852924  T
Q  147 tggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggc 246  Q
    |||||||||||||||| ||| ||  ||| || |||| |||| || |||||||||   |||| ||||||||| ||||| |||||||||||||| ||||||     
T  48852925 tggaaaggaaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggt 48853024  T
Q  247 tatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
     |||| |||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  48853025 catgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 48853099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 75 - 307
Target Start/End: Complemental strand, 45371963 - 45371731
Alignment:
Q  75 ttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattt 174  Q
    |||||||| ||||| ||||||| |||||||| ||||||||||| |||  ||||||| ||| |||||||||| ||||| |||||||||| ||||||  |||    
T  45371963 ttaatggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgtcttt 45371864  T
Q  175 tccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgg 274  Q
     || ||||||||||||  ||  |||| | |||||||||| ||| |||| ||| ||||||| ||||| ||||||| | |||| |  |||||||||||||||    
T  45371863 gcctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaaatatgg 45371764  T
Q  275 gttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    |||||||||||||||||||||||||||||||||    
T  45371763 gttatgaaagaatacaaagtgcattcgtcttgg 45371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 307
Target Start/End: Complemental strand, 48147609 - 48147370
Alignment:
Q  74 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcatt 173  Q
    |||| |||| |||||||||||||  |||||| | |||||||| ||| |||||||||| |||  ||||||||| ||||||||| |||||| ||||||| ||    
T  48147609 tttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttttagagatgcctt 48147510  T
Q  174 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatg------gaacagttga 267  Q
    ||||||||||||||| |  |||| ||  | || || |||||||| |||||||| ||||||| ||||||  || ||||||  |||      | | ||||||    
T  48147509 ttccagatggttttggccttgaatctgaatatagtcatttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttga 48147410  T
Q  268 aatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  48147409 aatatgggtgatgaaagaatacaaagtgcattcgtcttgg 48147370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 335
Target Start/End: Complemental strand, 48156262 - 48156058
Alignment:
Q  137 tttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacct-atagattgtgatttgtggatatttggagaatttcta 235  Q
    ||||||||| ||||  |||||||||| ||||||| |||||| ||||||||| || ||  | || ||| ||||| |||||||| ||||||||||||||||     
T  48156262 tttgatttaatggatcggaaacttttagagatgccttttcctgatggttttcaccatacaactgata-attgtaatttgtgggtatttggagaatttctc 48156164  T
Q  236 agtctatgggctatgga---gg---atggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatcta 329  Q
    ||| |||||||| | ||   ||   ||| || ||||||||||||||| ||||| ||||||||||||||||| ||||||  |||||||||||||||  |||    
T  48156163 agtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttccta 48156064  T
Q  330 ttgatg 335  Q
    ||||||    
T  48156063 ttgatg 48156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 337
Target Start/End: Complemental strand, 49043940 - 49043795
Alignment:
Q  192 atgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaa 291  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| ||| ||||| |||   || |||  | ||||||||||||||| ||||||||||||||    
T  49043940 atgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaatatgggtgatgaaagaatacaa 49043841  T
Q  292 agtgcattcgtcttgggttaaaactcttgtcctatctattgatgtc 337  Q
    |||||||||||| |||  ||| ||||||||  | ||||||||||||    
T  49043840 agtgcattcgtcatggactaagactcttgttttttctattgatgtc 49043795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 307
Target Start/End: Complemental strand, 45366116 - 45365877
Alignment:
Q  74 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcatt 173  Q
    ||||||||| |||||||||||||  ||||||  | || |||   | ||||||||||| ||  |||||||||| | ||||||||||||||  | || ||||    
T  45366116 tttaatggggctattcattggtttgcttttcatcttggtttgcgattggatgttattatttcctttgatttaatcgaaaggaaacttttttatattcatt 45366017  T
Q  174 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatg-----ga-acagttga 267  Q
    |||||||||  ||| ||  |||||||   ||||||| ||||||| |||||||||||||| | ||| | |||||||||||  |||     || ||||||||    
T  45366016 ttccagatgagtttaaccgtgaacctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttga 45365917  T
Q  268 aatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    ||||||||| ||||||||||| ||||||| ||||||||||    
T  45365916 aatatgggtgatgaaagaatataaagtgcgttcgtcttgg 45365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 49038623 - 49038511
Alignment:
Q  219 tatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactct 318  Q
    ||||| |||||||||| ||| ||||||||||||||  ||  || |||||||||||||| ||||||||||||||||| ||||||||||||  ||| |||||    
T  49038623 tatttcgagaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactct 49038524  T
Q  319 tgtcctatctatt 331  Q
    ||| || ||||||    
T  49038523 tgttctgtctatt 49038511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 7790441 - 7790512
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatg 335  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 48705288 - 48705170
Alignment:
Q  64 agggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttg 163  Q
    |||| |||||| ||||||| |||||||||||||  ||| ||| |||||||||  || |||||||||||||| |||||||||| |||||||| |||||||     
T  48705288 aggggtgctctataatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaacttttt 48705189  T
Q  164 gagatgcattttccagatg 182  Q
    || |||| ||| |||||||    
T  48705188 gatatgcttttgccagatg 48705170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 48903119 - 48903359
Alignment:
Q  70 gctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatg 169  Q
    ||||||||||||| ||||||||| |||  ||||||  |||||||||  || | |||||||||||| |||||||||| || |||   | ||||| |||||     
T  48903119 gctctttaatggggctattcattagttggcttttcatcatgatttaagaaagaatgttattgttgcctttgatttaatgaaaaaagacctttttgagatt 48903218  T
Q  170 cattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggag---gatggaacagttg 266  Q
    | | | |||  || | | ||||||||| ||| | | |||||||| ||| |||||||||||||||| || ||||||||| ||||    |||   | | |||    
T  48903219 cctctcccacttgatgtggactatgaatctacaaagtgtgatttatgggtatttggagaatttcttagcctatgggctttggattacgataataaatttg 48903318  T
Q  267 aaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  48903319 aaatatgggtgatgaaagaatacaaagtgcatttgtcttgg 48903359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 7773529 - 7773468
Alignment:
Q  260 acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  7773529 acagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgt 7773468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 7878740 - 7878801
Alignment:
Q  260 acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  7878740 acagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgt 7878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 49044089 - 49043997
Alignment:
Q  70 gctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaactttt 162  Q
    ||||||||||||| ||||||| |||||  ||||||  | ||||||||||||| |||||||||||| |||||||||| | ||||||||||||||    
T  49044089 gctctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaactttt 49043997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 43596255 - 43596153
Alignment:
Q  140 gatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtc 239  Q
    |||||| | ||||| ||||| || ||||||| |||||| ||||||||||||||||| |||| | |||||||| ||||| ||||||| |||||||| ||||    
T  43596255 gatttaattgaaagcaaactcttagagatgctttttcccgatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtc 43596156  T
Q  240 tat 242  Q
    |||    
T  43596155 tat 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 7908663 - 7908734
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatg 335  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||||| || ||| ||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatg 7908734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 7813838 - 7813908
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgat 334  Q
    |||||||||||||  |||||||||||||||||||||||||||||  |||||||||||| || ||| |||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7813908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 48864395 - 48864439
Alignment:
Q  263 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttgg 48864439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 49048323 - 49048216
Alignment:
Q  195 aacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggttatgaaagaatacaaagt 294  Q
    |||||| |||||||||||||||| |||| || || ||||| ||| ||||| ||| | ||||||  | ||||||||||||||| |||||||| || |||||    
T  49048323 aacctacagattgtgatttgtgggtatt-ggtgagtttctcagtgtatggactaagcaggatgatatagttgaaatatgggtgatgaaagagtataaagt 49048225  T
Q  295 gcattcgtc 303  Q
    |||||||||    
T  49048224 gcattcgtc 49048216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 7771760 - 7771827
Alignment:
Q  268 aatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatg 335  Q
    ||||||||| |||||||||||||||||||||||||| |||  |||||||||||| || ||| ||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgatg 7771827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 7800998 - 7801068
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgat 334  Q
    |||||||||||||  ||||||| |||||||||||||||||||||  |||||||||||| || ||| |||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7801068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 45384595 - 45384549
Alignment:
Q  261 cagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttgg 45384549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 48863625 - 48863697
Alignment:
Q  263 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatg 335  Q
    ||||| |||||||| ||| ||||||||  ||||||||| |||||| ||||||||||||| || ||||||||||    
T  48863625 gttgacatatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgtgctttctattgatg 48863697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 321
Target Start/End: Original strand, 50666561 - 50666733
Alignment:
Q  158 cttttggagatgcattttccagatggt---tttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatgga-- 252  Q
    ||||| ||||||| | |||||||||||   |||| | ||| ||||||| |||||||||||||| ||||| |||| ||||| | | ||| |||||| ||      
T  50666561 cttttagagatgcctcttccagatggtgattttgtccatgtacctataaattgtgatttgtgggtatttagagagtttcttaatttatcggctattgatt 50666660  T
Q  253 ----ggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
        | |||  ||| ||||| ||||||| ||| ||||||||||||||||||| ||||||  ||||||||||||    
T  50666661 atgtgaatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgt 50666733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 7237500 - 7237386
Alignment:
Q  213 tgtggatatttggagaatttctaagtctatgggctatggaggatg-----ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttg 306  Q
    ||||| |||||||||||||||| ||||||||||||  |||  |||     || ||| ||| ||||||||| ||||||||||||||| ||||||||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  307 ggttaaaactcttgt 321  Q
    |  ||||||||||||    
T  7237400 gactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 7765804 - 7765885
Alignment:
Q  74 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaagga 155  Q
    ||||||||| ||||||||||||| ||||  || |||||| || |  ||||||| ||||||||||||||||||  ||||||||    
T  7765804 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 7765885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 45384747 - 45384634
Alignment:
Q  121 ggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggata 220  Q
    |||||||||| |||   |||||||| | |||| |||||||||  | |||||||| |||||||  ||| ||  ||||||||  ||||||| ||||||| ||    
T  45384747 ggatgttattattgctgttgatttaatcgaaatgaaacttttttatatgcatttgccagatgagtttaaccgtgaacctaccgattgtggtttgtgggta 45384648  T
Q  221 tttggagaatttct 234  Q
    ||||||||||||||    
T  45384647 tttggagaatttct 45384634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 251
Target Start/End: Complemental strand, 37826909 - 37826709
Alignment:
Q  57 ccaaagtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaa 156  Q
    |||||||||||   ||||| |||||| | |||||||||||  ||| ||| | ||||| | || || || ||||||||| |||| ||||| ||||||||||    
T  37826909 ccaaagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaa 37826810  T
Q  157 acttttggagatgca--tt----ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatg 250  Q
    ||| || ||||| |   ||    ||||||||| |||| || |||| |||  | ||| || ||||||| |||||||||||||||| ||||||||||| |||    
T  37826809 actgttagagatacccgttccagttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatg 37826710  T
Q  251 g 251  Q
    |    
T  37826709 g 37826709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 7766003 - 7766042
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtc 303  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtc 7766042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 7878048 - 7878087
Alignment:
Q  211 tttgtggatatttggagaatttctaagtctatgggctatg 250  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  7878048 tttgtgggtatttggagaatttctcagtctatgggctatg 7878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 48861649 - 48861692
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    ||||||||||||| || ||||||||||||||||||| |||||||    
T  48861649 ttgaaatatgggtaataaaagaatacaaagtgcatttgtcttgg 48861692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 7786626 - 7786707
Alignment:
Q  74 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaagga 155  Q
    ||||||||| ||||||||||||| ||||  || | |||| || |  ||||||| ||||||||||||||||||  ||||||||    
T  7786626 tttaatggggctattcattggttgtcttcgcgtcgtgatatagctttggatgtcattgttggctttgatttaacggaaagga 7786707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 7786825 - 7786882
Alignment:
Q  264 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||||||| |||||||||||||| |||||||  ||||||  ||| ||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgt 7786882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 50250572 - 50250454
Alignment:
Q  126 ttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagat---ggttttgactatgaacctatagattgtgatttgtggatatt 222  Q
    ||||||||| |||||||||  || ||||||||||||| ||||| | | ||||||||   | |||||||||| || ||  | ||||| |||||||| ||||    
T  50250572 ttattgttgcctttgatttcatg-aaaggaaactttttgagatccctcttccagatcacgattttgactatcaatctcgatattgttatttgtgggtatt 50250474  T
Q  223 tggagaatttctaagtctat 242  Q
    ||||||| |||| |||||||    
T  50250473 tggagaaattctcagtctat 50250454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 50669378 - 50669431
Alignment:
Q  202 agattgtgatttgtggatatttggagaatttctaagtctatgggctatggagga 255  Q
    |||||||| ||||||| |||||||||||||||| ||||| ||| || |||||||    
T  50669378 agattgtggtttgtgggtatttggagaatttctcagtctttggactttggagga 50669431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 7823332 - 7823400
Alignment:
Q  266 gaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgat 334  Q
    |||||||||||  | ||||| ||||||||||||| |||||||  |||||||||||| || ||| |||||    
T  7823332 gaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgttctttctgttgat 7823400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 37826681 - 37826633
Alignment:
Q  273 gggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    |||| ||||||||||||||| ||||||||||||||  ||| ||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgt 37826633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 307
Target Start/End: Original strand, 21015992 - 21016225
Alignment:
Q  74 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcatt 173  Q
    ||||||||| |||||||||||||  ||||||| ||||||||||||||| | |||||  ||| |||||||||  | ||||| |||||||| || |||  ||    
T  21015992 tttaatggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctt 21016091  T
Q  174 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatg 273  Q
    | || |||| | | ||  ||||||||||| |||||||||||||| |||| || |||||| | ||| ||||| |||||||   ||  | ||||||||||||    
T  21016092 tgccggatgatatggaacatgaacctatatattgtgatttgtgggtattcggtgaatttttgagtgtatggactatggatagtgatatagttgaaatatg 21016191  T
Q  274 ggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    ||||||||||||||||||||| ||||||||||||    
T  21016192 ggttatgaaagaatacaaagtacattcgtcttgg 21016225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 21979529 - 21979420
Alignment:
Q  72 tctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgca 171  Q
    |||||||| || |||||||||||||  |||||||  ||||||||||  ||  ||||||||||| |||||||||| | |||||||||||||| ||||| |     
T  21979529 tctttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcctttgatttaatagaaaggaaactttttgagatccc 21979430  T
Q  172 ttttccagat 181  Q
    | ||||||||    
T  21979429 tcttccagat 21979420  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 21979325 - 21979285
Alignment:
Q  267 aaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    |||||||||| ||||||||||||||||||| ||| ||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttgg 21979285  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 308
Target Start/End: Original strand, 179220 - 179463
Alignment:
Q  74 tttaatgggactattcattggttctcttttcgccatg---atttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgc 170  Q
    ||||||||| |||||||||||||||||||||| ||||   |||||  ||||||| ||||| ||| ||||||| || |  ||||| ||||||| ||||| |    
T  179220 tttaatggggctattcattggttctcttttcgtcatgatcatttacaaatggatcttattcttgcctttgatctaatcaaaagggaactttttgagattc 179319  T
Q  171 attttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatg-----ga-acagt 264  Q
     | | |||  || | ||||||||||| ||| | |||||||| | ||| |||||||| ||||||| ||| |||||||||||||  |||     || |||||    
T  179320 ctctcccaattgatattgactatgaagctacaaattgtgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagt 179419  T
Q  265 tgaaatatgggttatgaaagaatacaaagtgcattcgtcttggg 308  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  179420 tgaaatatgggtgatgaaagaatacaaagtgcattcatcttggg 179463  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 321
Target Start/End: Original strand, 9119928 - 9120181
Alignment:
Q  77 aatgggactattcattggttctcttttcgccatgat---ttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcatt 173  Q
    |||||| |||||||||||||| ||||||| ||||||   |||  || |||| ||||| ||| |||||||||| |  ||| | ||||||| ||||| | |     
T  9119928 aatgggtctattcattggttcgcttttcgtcatgatcatttacaaaaggatcttattcttgcctttgatttaatcaaaacggaactttttgagattcctc 9120027  T
Q  174 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggagg------atggaacagttga 267  Q
    | |||  || | |||| |||||| ||| | |||||||| ||||| |||||||||||||||| ||| |||||||||||||        |||  ||||||||    
T  9120028 tcccaattgatattgattatgaagctacaaattgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttga 9120127  T
Q  268 aatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||| ||||||||||||||||||||||| ||||||   |||||||||||    
T  9120128 aatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgt 9120181  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 29688481 - 29688533
Alignment:
Q  255 atggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    |||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  29688481 atggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttgg 29688533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 42562034 - 42561990
Alignment:
Q  263 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttgg 42561990  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 29696401 - 29696484
Alignment:
Q  77 aatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaactt 160  Q
    |||||| ||||||| |||||  |||||||  ||||| ||||||||  ||||||||||| |||| ||||| | ||||||||||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaactt 29696484  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 108 - 303
Target Start/End: Complemental strand, 4962385 - 4962180
Alignment:
Q  108 atgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaac----ctatag 203  Q
    ||||||||||| ||||||||||| ||| |||||||||| ||||||||||| | || ||||||| | ||||  ||| ||||||||||||||    || ||     
T  4962385 atgatttatcagtggatgttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaa 4962286  T
Q  204 attgtgatttgtggatatttggagaatttctaagtctatgggctatgga------ggatggaacagttgaaatatgggttatgaaagaatacaaagtgca 297  Q
     || || ||||||| |||||||||||||||| ||||||||||  |||||        || | | ||||||||||||||| ||||||||||||||| ||||    
T  4962285 gttatggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaactgca 4962186  T
Q  298 ttcgtc 303  Q
    ||||||    
T  4962185 ttcgtc 4962180  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 4031628 - 4031583
Alignment:
Q  262 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgg 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4031628 agttgaaatatgggttatgaaagaatacaaaatgcattcgtcttgg 4031583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 4031822 - 4031711
Alignment:
Q  51 atgatcccaaagtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtgga 150  Q
    ||||||||| |||||||  ||| |||| |||  |||||||||||||  ||||||| ||||||||||| ||  ||||||| |||| ||||||||||  |||    
T  4031822 atgatcccagagtagggtcgctttttagtggatctattcattggttggcttttcgtcatgatttatcgataaatgttatcgttgcctttgatttaacgga 4031723  T
Q  151 aaggaaactttt 162  Q
    ||| ||||||||    
T  4031722 aagaaaactttt 4031711  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 24367531 - 24367592
Alignment:
Q  269 atatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctat 330  Q
    |||||||| ||| ||||||||||||||||||||||||||  |||||||||||| ||| ||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttctaactat 24367592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 321
Target Start/End: Original strand, 24340634 - 24340829
Alignment:
Q  129 ttgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggaga 228  Q
    |||||| |||||| ||||| |||||||||||| | ||||| | | | ||||||| ||||||| |||    ||  | ||||| ||| ||| ||| | |||     
T  24340634 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24340733  T
Q  229 atttctaagtctatgggctatggaggatg--ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||||||||||| ||||| |||||  || || ||||| || ||||| ||||||||||| |||||||| || ||||||  ||||||||||||    
T  24340734 atttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgt 24340829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 321
Target Start/End: Original strand, 24352999 - 24353194
Alignment:
Q  129 ttgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggaga 228  Q
    |||||| |||||| ||||| |||||||||||| | ||||| | | | ||||||| ||||||| |||    ||  | ||||| ||| ||| ||| | |||     
T  24352999 ttgttgcctttgaattagtcgaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagagg 24353098  T
Q  229 atttctaagtctatgggctatggaggatg--ga-acagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||||||||||| ||||| |||||  || || ||||| || ||||| ||||||||||| |||||||| || ||||||  ||||||||||||    
T  24353099 atttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgt 24353194  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 24310575 - 24310634
Alignment:
Q  262 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    |||||| |||||||| |||||||||||||||||||| || ||||||  ||||||||||||    
T  24310575 agttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgt 24310634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 24416137 - 24416196
Alignment:
Q  262 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    |||||| |||||||| |||||||||||||||| ||| || ||||||  ||||||||||||    
T  24416137 agttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgt 24416196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 48884183 - 48884242
Alignment:
Q  262 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 321  Q
    ||||||||||| ||| |||||||||||||||||||||  |||||||  ||| ||||||||    
T  48884183 agttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgt 48884242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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