View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6859_low_4 (Length: 302)

Name: NF6859_low_4
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6859_low_4
NF6859_low_4
[»] chr1 (40 HSPs)
chr1 (1-286)||(17490253-17490538)
chr1 (1-58)||(37734863-37734920)
chr1 (1-53)||(639797-639849)
chr1 (1-53)||(33604081-33604133)
chr1 (1-53)||(48022593-48022645)
chr1 (1-46)||(5856447-5856492)
chr1 (1-53)||(6065551-6065603)
chr1 (1-53)||(8258033-8258085)
chr1 (1-53)||(31008349-31008401)
chr1 (1-44)||(4060178-4060221)
chr1 (1-43)||(27206767-27206809)
chr1 (1-53)||(3384221-3384273)
chr1 (1-53)||(6065459-6065511)
chr1 (1-53)||(8257941-8257993)
chr1 (1-53)||(23944035-23944087)
chr1 (1-53)||(27206849-27206901)
chr1 (1-53)||(31008257-31008309)
chr1 (1-53)||(35367568-35367620)
chr1 (1-44)||(2349763-2349806)
chr1 (1-44)||(4602651-4602694)
chr1 (1-44)||(37734780-37734823)
chr1 (7-53)||(4060267-4060313)
chr1 (4-53)||(14418150-14418199)
chr1 (5-53)||(639893-639941)
chr1 (1-53)||(1035977-1036029)
chr1 (4-60)||(35366962-35367018)
chr1 (5-53)||(48022689-48022737)
chr1 (3-46)||(1035892-1035935)
chr1 (1-44)||(4602734-4602777)
chr1 (1-44)||(34658393-34658436)
chr1 (1-44)||(40262475-40262518)
chr1 (2-44)||(3384314-3384356)
chr1 (4-46)||(34597525-34597567)
chr1 (1-30)||(2352916-2352945)
chr1 (1-46)||(2352985-2353030)
chr1 (3-44)||(5431348-5431389)
chr1 (3-44)||(5431432-5431473)
chr1 (1-58)||(14214543-14214600)
chr1 (3-44)||(19175680-19175721)
chr1 (5-53)||(33603989-33604037)
[»] chr5 (29 HSPs)
chr5 (1-53)||(3851361-3851413)
chr5 (1-53)||(23914839-23914891)
chr5 (1-51)||(19531391-19531441)
chr5 (4-44)||(35969135-35969175)
chr5 (1-53)||(42013820-42013872)
chr5 (1-44)||(11262335-11262378)
chr5 (1-44)||(37944609-37944652)
chr5 (1-59)||(19531293-19531351)
chr5 (1-46)||(35969219-35969264)
chr5 (1-46)||(37870022-37870067)
chr5 (1-53)||(15712211-15712263)
chr5 (1-53)||(26300109-26300161)
chr5 (1-44)||(8961226-8961269)
chr5 (1-40)||(13157344-13157383)
chr5 (1-40)||(15712132-15712171)
chr5 (1-44)||(42013912-42013955)
chr5 (7-53)||(43447464-43447510)
chr5 (1-58)||(11795729-11795786)
chr5 (1-53)||(3851453-3851505)
chr5 (1-53)||(6763787-6763839)
chr5 (5-53)||(23914935-23914983)
chr5 (1-45)||(38835531-38835575)
chr5 (1-44)||(11262418-11262461)
chr5 (1-44)||(37944692-37944735)
chr5 (5-46)||(17625734-17625775)
chr5 (1-53)||(38835615-38835668)
chr5 (1-42)||(43446868-43446909)
chr5 (1-53)||(13311173-13311224)
chr5 (1-53)||(26300201-26300253)
[»] chr6 (16 HSPs)
chr6 (1-58)||(21506456-21506513)
chr6 (1-58)||(17773591-17773648)
chr6 (1-53)||(21998037-21998089)
chr6 (1-59)||(30397717-30397775)
chr6 (3-44)||(17773508-17773549)
chr6 (1-53)||(30397814-30397866)
chr6 (1-44)||(21998129-21998172)
chr6 (7-53)||(31536309-31536355)
chr6 (1-37)||(4844365-4844401)
chr6 (5-53)||(26527188-26527236)
chr6 (1-53)||(28577599-28577651)
chr6 (1-40)||(28577691-28577730)
chr6 (1-44)||(30460703-30460746)
chr6 (1-44)||(31536404-31536447)
chr6 (7-52)||(16121061-16121106)
chr6 (3-40)||(30460624-30460661)
[»] chr8 (16 HSPs)
chr8 (1-53)||(14381236-14381288)
chr8 (1-53)||(40098850-40098902)
chr8 (1-60)||(40098751-40098810)
chr8 (1-44)||(14381328-14381371)
chr8 (1-44)||(26014576-26014619)
chr8 (1-53)||(1739655-1739707)
chr8 (1-53)||(9056019-9056071)
chr8 (1-53)||(9056111-9056163)
chr8 (8-44)||(26014665-26014701)
chr8 (1-53)||(33574877-33574929)
chr8 (1-37)||(7377568-7377604)
chr8 (1-44)||(13228877-13228920)
chr8 (7-53)||(11692046-11692092)
chr8 (8-53)||(2810030-2810075)
chr8 (1-46)||(9808379-9808424)
chr8 (1-44)||(7377644-7377688)
[»] chr4 (21 HSPs)
chr4 (1-53)||(52817657-52817709)
chr4 (1-44)||(24941118-24941161)
chr4 (1-58)||(5281225-5281282)
chr4 (1-53)||(5418605-5418657)
chr4 (1-53)||(55087801-55087853)
chr4 (1-44)||(13689543-13689586)
chr4 (1-44)||(13689626-13689669)
chr4 (1-44)||(44156090-44156133)
chr4 (1-42)||(29223951-29223992)
chr4 (1-44)||(5418522-5418565)
chr4 (3-53)||(4370398-4370448)
chr4 (3-53)||(19934636-19934686)
chr4 (3-53)||(19934730-19934780)
chr4 (3-53)||(54164811-54164861)
chr4 (7-44)||(2198055-2198092)
chr4 (7-44)||(22720602-22720639)
chr4 (5-46)||(34616309-34616350)
chr4 (1-45)||(3504083-3504127)
chr4 (5-53)||(14450955-14451003)
chr4 (1-53)||(24941201-24941253)
chr4 (5-53)||(52817565-52817613)
[»] chr2 (23 HSPs)
chr2 (1-53)||(34248505-34248557)
chr2 (1-58)||(3887826-3887883)
chr2 (1-53)||(5574200-5574252)
chr2 (1-44)||(34248422-34248465)
chr2 (1-58)||(38598030-38598087)
chr2 (1-53)||(3887923-3887975)
chr2 (1-53)||(38594434-38594486)
chr2 (1-44)||(6567005-6567048)
chr2 (1-44)||(30902363-30902406)
chr2 (1-44)||(43426635-43426678)
chr2 (4-53)||(38594342-38594391)
chr2 (4-53)||(38597938-38597987)
chr2 (1-53)||(1980983-1981035)
chr2 (1-41)||(3714223-3714263)
chr2 (1-53)||(5574108-5574160)
chr2 (1-44)||(1981074-1981117)
chr2 (1-44)||(20504250-20504293)
chr2 (5-46)||(13333452-13333493)
chr2 (1-42)||(30902282-30902323)
chr2 (3-44)||(44274633-44274674)
chr2 (1-53)||(3121512-3121564)
chr2 (18-46)||(38618119-38618147)
chr2 (1-53)||(43426718-43426770)
[»] chr3 (31 HSPs)
chr3 (1-44)||(33412555-33412598)
chr3 (1-44)||(42449112-42449155)
chr3 (1-59)||(51617323-51617381)
chr3 (1-59)||(52315480-52315538)
chr3 (1-42)||(50260942-50260983)
chr3 (1-58)||(51617421-51617478)
chr3 (1-38)||(33412478-33412515)
chr3 (1-53)||(29720074-29720126)
chr3 (1-53)||(51239333-51239385)
chr3 (1-41)||(52315400-52315440)
chr3 (1-40)||(36362694-36362733)
chr3 (7-53)||(38455163-38455209)
chr3 (1-58)||(17552470-17552527)
chr3 (1-53)||(21403986-21404036)
chr3 (1-46)||(22173800-22173845)
chr3 (1-53)||(41349750-41349803)
chr3 (4-53)||(51239241-51239290)
chr3 (1-53)||(29565107-29565159)
chr3 (1-53)||(29720166-29720218)
chr3 (1-53)||(41349658-41349710)
chr3 (1-53)||(52168281-52168333)
chr3 (1-53)||(52931763-52931815)
chr3 (1-44)||(22099786-22099829)
chr3 (1-40)||(29565199-29565238)
chr3 (1-44)||(52931648-52931691)
chr3 (1-51)||(21403897-21403946)
chr3 (7-53)||(52168379-52168425)
chr3 (1-41)||(29720239-29720279)
chr3 (1-53)||(36362602-36362654)
chr3 (1-53)||(38455255-38455307)
chr3 (6-46)||(39579588-39579628)
[»] chr7 (24 HSPs)
chr7 (1-53)||(34703533-34703585)
chr7 (1-53)||(38238874-38238926)
chr7 (1-53)||(46943942-46943994)
chr7 (1-44)||(25079214-25079257)
chr7 (1-44)||(40416996-40417039)
chr7 (1-58)||(29498776-29498833)
chr7 (5-53)||(4407713-4407761)
chr7 (1-44)||(4406424-4406467)
chr7 (1-44)||(25079297-25079340)
chr7 (1-58)||(22106757-22106814)
chr7 (1-53)||(38238781-38238834)
chr7 (1-58)||(40529537-40529594)
chr7 (1-53)||(27554587-27554639)
chr7 (5-44)||(1706927-1706966)
chr7 (1-44)||(21387583-21387626)
chr7 (1-44)||(22106674-22106717)
chr7 (1-40)||(29498873-29498912)
chr7 (1-44)||(40529634-40529677)
chr7 (1-51)||(22281443-22281493)
chr7 (2-44)||(45000692-45000734)
chr7 (1-42)||(716324-716365)
chr7 (5-58)||(6455643-6455696)
chr7 (1-53)||(1706831-1706883)
chr7 (1-53)||(40416904-40416956)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-60)||(120136-120195)
scaffold0024 (1-53)||(120235-120287)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-58)||(61156-61213)
scaffold0047 (1-53)||(61252-61304)
[»] scaffold0039 (2 HSPs)
scaffold0039 (1-42)||(54397-54438)
scaffold0039 (1-46)||(54478-54523)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-53)||(246885-246937)
scaffold0007 (1-44)||(246802-246845)
[»] scaffold0536 (2 HSPs)
scaffold0536 (3-53)||(4042-4092)
scaffold0536 (7-53)||(3948-3994)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 17490538 - 17490253
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctattatgtgtatttgatcatggttgatagctctatttttaatgctg 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17490538 taattaaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtctattatgtgtatttgatcatggttgatagctctatttttaatgctg 17490439  T
Q  101 cttaatcccatttaggcacaagttacaatatttcaaagtgatttatccaaatatctcagtgtacatttaacttgagttagatgcattaggcttgggcaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17490438 cttaatcccatttaggcacaagttacaatatttcaaagtgatttatccaaatatctcagtgtacatttaacttgagttagatgcattaggcttgggcaac 17490339  T
Q  201 tgtttgcgtgctcaaaatttgtatttaatttgactgtaagtgtacatttgaccggctattgtcagttactaggtccataatttagc 286  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17490338 tgtttgcttgctcaaaatttgtatttaatttgattgtaagtgtacatttgaccggctattgtcagttactatgtccataatttagc 17490253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37734863 - 37734920
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  37734863 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtatt 37734920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 639849 - 639797
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  639849 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 639797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33604081 - 33604133
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  33604081 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 33604133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48022645 - 48022593
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  48022645 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 48022593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5856447 - 5856492
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5856447 taattgaatgtatttaaaaagtggatttttgcttatattagtgatc 5856492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6065551 - 6065603
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  6065551 taattgaatgtatctaaagagtggatttttgcttatattagtgaccggagggt 6065603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8258033 - 8258085
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  8258033 taattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggt 8258085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31008349 - 31008401
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  31008349 taattgaatgtatctaaaaagtggatttttgcttatattaatgaccggagggt 31008401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4060221 - 4060178
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4060221 taattgaatatatctaaaaagtggatttttgcttatattagtga 4060178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27206809 - 27206767
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtg 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  27206809 taattgaatgtatctaaaaagtggttttttgcttatattagtg 27206767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3384273 - 3384221
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| | ||||||    
T  3384273 taattgaatgtatctaaaaagtgaatttttgcttatattaatgaccggagggt 3384221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6065511 - 6065459
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||| || |||||||||||||||||| | ||||||    
T  6065511 taattgaatgtatctaaaaagtagaattttgcttatattagtgaccggagggt 6065459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8257993 - 8257941
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  8257993 taattgaatgtatctaaaaagtgaatttttgcttatatttgtgaccggagggt 8257941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23944087 - 23944035
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| || |||||||||||||||||||| | ||||||    
T  23944087 taattgaatgtatctaaaaaatgaatttttgcttatattagtgaccggagggt 23944035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27206849 - 27206901
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  27206849 taattgaatgtatctaaatagttgatttttgcttatattagtgaccggagggt 27206901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31008309 - 31008257
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  31008309 taattaaatgtatctaaaaagtagatttttgcttatattagtgaccggagggt 31008257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35367568 - 35367620
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| |||||||||||||||| |||||| | ||||||    
T  35367568 taattgaatgtatctaaaaaatggatttttgcttatagtagtgaccggagggt 35367620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2349806 - 2349763
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  2349806 taattgaatgtatctaaaaaatggatttttgtttatattagtga 2349763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4602694 - 4602651
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  4602694 taattgaatgtatctaaaaagtggaattttgtttatattagtga 4602651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37734823 - 37734780
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||    
T  37734823 taattgaatgtatcttaaaagtgaatttttgcttatattagtga 37734780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 4060267 - 4060313
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  4060267 aatgtatctaaaaagtagatttttgcttatattagtgaccggagggt 4060313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 14418150 - 14418199
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| |||||||||||||||| ||| | ||||||    
T  14418150 ttgaatgtatctaaaaagtgaatttttgcttatattaatgaccggagggt 14418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 639893 - 639941
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||| ||||||| |||||||||||||||||||| | ||||||    
T  639893 tgaatgtatcttaaaagtgaatttttgcttatattagtgaccggagggt 639941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1035977 - 1036029
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| | ||||||    
T  1035977 taattgaatgaatctagaaagtgaatttttgcttatattagtgaccggagggt 1036029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 35367018 - 35366962
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctattat 60  Q
    ||||||||||||||||| | |||||||  |||||||||||||| |||||| ||||||    
T  35367018 ttgaatgtatctaaaaattagatttttatttatattagtgatcggagggtgtattat 35366962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 48022689 - 48022737
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||| ||||||| |||||||||||||||||||| | ||||||    
T  48022689 tgaatgtatcttaaaagtgaatttttgcttatattagtgaccggagggt 48022737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 1035935 - 1035892
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||    
T  1035935 attgaatgaatctagaaactggatttttgcttatattagtgatc 1035892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4602734 - 4602777
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||| || |||||| |||||||||||||    
T  4602734 taattgaatgtatctaaaaaatgaatttttacttatattagtga 4602777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34658436 - 34658393
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||    
T  34658436 taattaaatgtatctgaaaagtgaatttttgcttatattagtga 34658393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40262518 - 40262475
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||    
T  40262518 taattgaatatatctaaaaactggatttttgtttatattagtga 40262475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 3384314 - 3384356
Alignment:
Q  2 aattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||| ||||||  ||||||||||||    
T  3384314 aattgaatgtatctaaaaagtgaatttttatttatattagtga 3384356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 34597567 - 34597525
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||    
T  34597567 ttgaatgaatctaaaaagtgaatttttgcttataatagtgatc 34597525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2352945 - 2352916
Alignment:
Q  1 taattgaatgtatctaaaaagtggattttt 30  Q
    ||||||||||||||||||||||||||||||    
T  2352945 taattgaatgtatctaaaaagtggattttt 2352916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2352985 - 2353030
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||| |||||||||||||| |  ||||||||||||||||||||||    
T  2352985 taattaaatgtatctaaaaaataaatttttgcttatattagtgatc 2353030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 5431389 - 5431348
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||| |||||||||||| ||||||||||||| ||||||    
T  5431389 attgaatgaatctaaaaagtgaatttttgcttataatagtga 5431348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 5431432 - 5431473
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||| |||||||||||  ||||||||||||||||||||    
T  5431432 attgaatgaatctaaaaagttaatttttgcttatattagtga 5431473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14214600 - 14214543
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||| | |||||||||| ||||||||||||| |||||| | |||||| ||||    
T  14214600 taattgaatgaacctaaaaagtgaatttttgcttataatagtgaccggagggtgtatt 14214543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 19175680 - 19175721
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||| ||||||||||| |||||||||||||| ||||||    
T  19175680 attgaatgaatctaaaaagtagatttttgcttataatagtga 19175721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 33604037 - 33603989
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||| ||||||| ||||||| |||||||||||| | ||||||    
T  33604037 tgaatgtatcttaaaagtgaatttttgtttatattagtgaccggagggt 33603989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3851413 - 3851361
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3851413 taattgaatgtatctaaaaagtggatttttgcttatattagtgatcggagggt 3851361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23914891 - 23914839
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  23914891 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 23914839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19531391 - 19531441
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagg 51  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19531391 taattgaatgtatctaaaaagtgaatttttgcttatattagtgatcggagg 19531441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 35969175 - 35969135
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35969175 ttgaatgtatctaaaaagtggatttttgcttatattagtga 35969135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42013872 - 42013820
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  42013872 taattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggt 42013820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11262378 - 11262335
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  11262378 taattgaatgtatctaaaaagtgaatttttgcttatattagtga 11262335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37944652 - 37944609
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  37944652 taattgaatgtatctaaaaagtgaatttttgcttatattagtga 37944609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19531351 - 19531293
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatta 59  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| | |||||| |||||    
T  19531351 taattgaatgtatctaaaaagtgaatttttgcttatatttgtgaccggagggtgtatta 19531293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35969219 - 35969264
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  35969219 taattgaatgtatctaaaaagtgaatttttacttatattagtgatc 35969264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37870067 - 37870022
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  37870067 taattgaatgtatctaaaaaatggttttttgcttatattagtgatc 37870022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15712211 - 15712263
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  15712211 taattgaatgtatttaaaaagttgatttttgcttatattaatgatcggagggt 15712263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26300161 - 26300109
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||  |||||||||||||||||||| | ||||||    
T  26300161 taattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggt 26300109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8961269 - 8961226
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  8961269 taattgaatgtatctaaagagtgaatttttgcttatattagtga 8961226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13157383 - 13157344
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  13157383 taattgaatatatctaaaaagtggatttttgcttatatta 13157344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15712171 - 15712132
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  15712171 taattgaatgtatctaaaaaatggatttttgcttatatta 15712132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42013912 - 42013955
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  42013912 taattgaatgtatctaaaaagtgaatttttgcttatatttgtga 42013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 43447464 - 43447510
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||    
T  43447464 aatgtatctaaaaagtgaatttttgcttatattagtgaccggagggt 43447510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11795786 - 11795729
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||| |||||||| || ||||||||||||||||||||| | |||||| ||||    
T  11795786 taattgaatgaatctaaaatgttgatttttgcttatattagtgaccggagggtatatt 11795729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3851453 - 3851505
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| |||||||||||||| || |||||||||||||||||||| | ||||||    
T  3851453 taattaaatgtatctaaaaaatgaatttttgcttatattagtgaccggagggt 3851505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6763787 - 6763839
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||| | ||||||    
T  6763787 taattgaatgaatctagaaaatggatttttgcttatattagtgaccggagggt 6763839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 23914935 - 23914983
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||| ||||||| |||||||||||||||||||| | ||||||    
T  23914935 tgaatgtatcttaaaagtgaatttttgcttatattagtgaccggagggt 23914983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38835575 - 38835531
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgat 45  Q
    ||||| |||||||||||||| || |||||||||||||||||||||    
T  38835575 taattaaatgtatctaaaaaatgaatttttgcttatattagtgat 38835531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11262418 - 11262461
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||| ||| || ||||||||||||||||||||    
T  11262418 taattgaatgtatctacaaaatgaatttttgcttatattagtga 11262461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37944692 - 37944735
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||| |  ||||||||||||||||||||    
T  37944692 taattgaatgtatctaaaaaataaatttttgcttatattagtga 37944735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 17625734 - 17625775
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||||| || |||||||||||||| ||||||||    
T  17625734 tgaatgtatctaaaacgttgatttttgcttataatagtgatc 17625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38835615 - 38835668
Alignment:
Q  1 taattgaatgtatctaaaaagtgga-tttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||| | ||||||    
T  38835615 taattgaatgtatttaaaaagtgaattttttgcttatattagtgaccagagggt 38835668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43446909 - 43446868
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagt 42  Q
    ||||| ||||||||||||||||  ||||||||||||||||||    
T  43446909 taattaaatgtatctaaaaagtaaatttttgcttatattagt 43446868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13311224 - 13311173
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||| || || |||||||||||||||||| | ||||||    
T  13311224 taattgaatgtatctaaaa-gtagacttttgcttatattagtgaccggagggt 13311173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26300201 - 26300253
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||  | |||| ||||||||||||| | ||||||    
T  26300201 taattgaatgtatctaaaaagtaaaattttacttatattagtgaccggagggt 26300253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21506513 - 21506456
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  21506513 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtatt 21506456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17773591 - 17773648
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||    
T  17773591 taattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgtatt 17773648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21998089 - 21998037
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  21998089 taattgaatgtatctaaaaaatgtatttttgcttatattagtgatcggagggt 21998037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30397775 - 30397717
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatta 59  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| | |||||| |||||    
T  30397775 taattgaatgtatctaaaatgtggatttttgtttatattagtgaccggagggtgtatta 30397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 17773549 - 17773508
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  17773549 attgaatgtatctaaaaagtggatttttgtttatattagtga 17773508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30397814 - 30397866
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||  |||||||||||||||||||||| | ||||||    
T  30397814 taattgaatgtatctaaaaaagggatttttgcttatattagtgaccggagggt 30397866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21998129 - 21998172
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  21998129 taattgaatgtatctaaaaagtagatttttgcttatattggtga 21998172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 31536355 - 31536309
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  31536355 aatgtatctaaaaagttgatttttgcttatattagtgaccggagggt 31536309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4844365 - 4844401
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttata 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4844365 taattgaatgtatctaaaaagtgaatttttgcttata 4844401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26527236 - 26527188
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||| || |||||||||||||| |||||||| ||||||    
T  26527236 tgaatgtatctaaaatgttgatttttgcttataatagtgatcggagggt 26527188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28577651 - 28577599
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| |||||||||||||| || |||||||||||||||||||| | ||||||    
T  28577651 taattaaatgtatctaaaaaatgaatttttgcttatattagtgacctgagggt 28577599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28577691 - 28577730
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  28577691 taattgaatgtatctaaaaagtatatttttgcttatatta 28577730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30460703 - 30460746
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  30460703 taattgaatctatctaaaaagtaaatttttgcttatattagtga 30460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31536404 - 31536447
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||    
T  31536404 taattgaatgtatttaaaaagtaaatttttgcttatattagtga 31536447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 16121061 - 16121106
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgaggg 52  Q
    |||| ||||||||||| |||||||||||||| |||||||| |||||    
T  16121061 aatgaatctaaaaagttgatttttgcttataatagtgatcggaggg 16121106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 30460661 - 30460624
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  30460661 attgaatatatctacaaagtggatttttgcttatatta 30460624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14381288 - 14381236
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  14381288 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 14381236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40098850 - 40098902
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  40098850 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 40098902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40098810 - 40098751
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctattat 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||||    
T  40098810 taattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgtattat 40098751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14381328 - 14381371
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  14381328 taattgaatgtatctaaaaagtggatttttgtttatattagtga 14381371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26014619 - 26014576
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  26014619 taattgaatgtatctaaaaagtgaatttttgcttatattagtga 26014576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1739655 - 1739707
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||  |||||||||||||||||||| | ||||||    
T  1739655 taattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggt 1739707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9056071 - 9056019
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  9056071 taattgaatgtatctaaaaagtgaatttttgcttatatttgtgaccggagggt 9056019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9056111 - 9056163
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| | ||||||    
T  9056111 taattaaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggt 9056163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 26014665 - 26014701
Alignment:
Q  8 atgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||||||||||||||||||    
T  26014665 atgtatctaaaaagtggatttttgcttatattagtga 26014701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33574877 - 33574929
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| | ||||||    
T  33574877 taattgaatgtatctaaaatgtggatttttgtttatattagtgaccggagggt 33574929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7377604 - 7377568
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttata 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7377604 taattgaatgtatctaaaaagtgaatttttgcttata 7377568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13228920 - 13228877
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||    
T  13228920 taattgaatgtatttaaaaaatggatttttgtttatattagtga 13228877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 11692092 - 11692046
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||||||||||||||| |||||||||||| | ||||||    
T  11692092 aatgtgtctaaaaagtggatttttgtttatattagtgaccggagggt 11692046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 2810075 - 2810030
Alignment:
Q  8 atgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||||||    
T  2810075 atgtatttaaaaaatggatttttgcttatattagtaatcggagggt 2810030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9808424 - 9808379
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  9808424 taattgaatgtatataaaaagtaaatttttgtttatattagtgatc 9808379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7377644 - 7377688
Alignment:
Q  1 taattgaatgtatctaaaaag-tggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||  || ||||||||||||||||||||    
T  7377644 taattgaatgtatctaaaaaaatgaatttttgcttatattagtga 7377688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52817657 - 52817709
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52817657 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 52817709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24941161 - 24941118
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  24941161 taattgaatgtatctaaaaagtgaatttttgcttatattagtga 24941118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5281225 - 5281282
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| | |||||| ||||    
T  5281225 taattgaatgtatctaaaaagtgaatttttacttatattagtgaccggagggtgtatt 5281282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5418605 - 5418657
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||| ||||||    
T  5418605 taattcaatgtatctaaaaagtaaatttttgcttatattagtgatcggagggt 5418657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55087801 - 55087853
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| | ||||||||||||||||||||| | ||||||    
T  55087801 taattgaatgtatctaaaaattagatttttgcttatattagtgaccggagggt 55087853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13689586 - 13689543
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  13689586 taattgaatgtatctaaaaaatagatttttgcttatattagtga 13689543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13689626 - 13689669
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  13689626 taattgaatgaatctaaaaagtgaatttttgcttatattagtga 13689669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44156090 - 44156133
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  44156090 taattcaatgtatctaaaaagtgaatttttgcttatattagtga 44156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29223992 - 29223951
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagt 42  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  29223992 taattgaatatatctaaaaaatggatttttgcttatattagt 29223951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5418565 - 5418522
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||| | |||||||||| ||||||||||    
T  5418565 taattgaatgtatctaaaaaattgatttttgctcatattagtga 5418522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 4370448 - 4370398
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||| ||||||||  |||||||||||||||||| |||||| ||||||    
T  4370448 attgaatgaatctaaaatatggatttttgcttatatttgtgatcggagggt 4370398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 19934686 - 19934636
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||| |||||||||||||| ||||||||||| |||||| | ||||||    
T  19934686 attgaatgaatctaaaaagtggaattttgcttataatagtgaccggagggt 19934636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 19934730 - 19934780
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||| ||||||||| | |||||||||||||| |||||||| ||||||    
T  19934730 attgaatgaatctaaaaaatagatttttgcttataatagtgatcggagggt 19934780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 54164861 - 54164811
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||| |||||||||||||| ||||||||||| |||||| | ||||||    
T  54164861 attgaatgaatctaaaaagtggaattttgcttataatagtgaccggagggt 54164811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 2198092 - 2198055
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  2198092 aatgtatctaaaaagtggagttttgcttataatagtga 2198055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 22720602 - 22720639
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  22720602 aatgtatctaaaaagtggagttttgcttataatagtga 22720639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 34616309 - 34616350
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||||| || |||||||||||||| ||||||||    
T  34616309 tgaatgtatctaaaacgttgatttttgcttataatagtgatc 34616350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3504127 - 3504083
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgat 45  Q
    |||||||||| ||||||||| || ||||||| |||||||||||||    
T  3504127 taattgaatgaatctaaaaaatgaatttttgtttatattagtgat 3504083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 14451003 - 14450955
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||| |||||||| || |||||||||||||| |||||||| ||||||    
T  14451003 tgaatgaatctaaaatgtagatttttgcttataatagtgatcggagggt 14450955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24941201 - 24941253
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||| ||| ||||||||| |||| ||||| | ||||||    
T  24941201 taattgaatgtatctaaaaggtgaatttttgctcatatcagtgaccggagggt 24941253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 52817613 - 52817565
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||| ||||||| |||||||||||||| ||||| | ||||||    
T  52817613 tgaatgtatcttaaaagtgaatttttgcttatatcagtgaccggagggt 52817565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34248505 - 34248557
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  34248505 taattgaatgtatctaaaaagtggatttttgcttatattagtgaccagagggt 34248557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3887883 - 3887826
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||    
T  3887883 taattgaatgtatctaaaaaatagatttttgcttatattagtgatcagagggtgtatt 3887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5574200 - 5574252
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  5574200 taattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggt 5574252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34248465 - 34248422
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  34248465 taattgaatgtatctaaaaagtgaatttttgcttatattagtga 34248422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38598030 - 38598087
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||| | ||||||||||||||||||||| | |||||| ||||    
T  38598030 taattgaatgtatctaaaaaatagatttttgcttatattagtgaccggagggtgtatt 38598087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3887923 - 3887975
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||  ||||||||||||||||||||| | ||||||    
T  3887923 taattgaatgtatctaaaaagatgatttttgcttatattagtgaccggagggt 3887975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38594434 - 38594486
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| | ||||||||||||||||||||| | ||||||    
T  38594434 taattgaatgtatctaaaaaatagatttttgcttatattagtgaccggagggt 38594486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6567005 - 6567048
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  6567005 taattgaatatatctaaatagtggatttttgcttatattagtga 6567048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30902363 - 30902406
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  30902363 taattgaatgtatctaaaaagtaaatttttgcttatattagtga 30902406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43426678 - 43426635
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||| |||||||||||||||| |||||||||||||    
T  43426678 taattgaatgtatttaaaaagtggatttttacttatattagtga 43426635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 38594391 - 38594342
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  38594391 ttgaatgtatctaaagagtagatttttgcttatattagtgaccggagggt 38594342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 38597987 - 38597938
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  38597987 ttgaatgtatctaaagagtagatttttgcttatattagtgaccggagggt 38597938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1981035 - 1980983
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||| | ||||||    
T  1981035 taattgaatgtatttaaaatgtggaattttgcttatattagtgaccggagggt 1980983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3714263 - 3714223
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattag 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  3714263 taattgaatgtatctaaaaagtggttttttacttatattag 3714223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5574160 - 5574108
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||| | ||||||| |||||||||||||||||||| | ||||||    
T  5574160 taattgaatgtattttaaaagtgaatttttgcttatattagtgaccggagggt 5574108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1981074 - 1981117
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  1981074 taattgaatgtatctaaaaatgagatttttgcttatattagtga 1981117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20504293 - 20504250
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||    
T  20504293 taattgaatatatctaaaaagtagatttttgtttatattagtga 20504250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 13333493 - 13333452
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||||| || |||||||||||||| ||||||||    
T  13333493 tgaatgtatctaaaacgttgatttttgcttataatagtgatc 13333452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30902323 - 30902282
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagt 42  Q
    ||||||||||||| |||||| || ||||||||||||||||||    
T  30902323 taattgaatgtatttaaaaaatgaatttttgcttatattagt 30902282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 44274633 - 44274674
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||| |||||||||||| |||||||||||||| |||||    
T  44274633 attgaatgaatctaaaaagtgaatttttgcttatatcagtga 44274674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3121512 - 3121564
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||| |||||||| || |||||||||||||| |||||| | ||||||    
T  3121512 taattgaatggatctaaaatgtagatttttgcttataatagtgaccggagggt 3121564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 38618147 - 38618119
Alignment:
Q  18 aaagtggatttttgcttatattagtgatc 46  Q
    |||||||||||||||||||||||||||||    
T  38618147 aaagtggatttttgcttatattagtgatc 38618119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43426718 - 43426770
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| |  |||||||||||||||| ||| | ||||||    
T  43426718 taattgaatgtatctaaaaaataaatttttgcttatattaatgaccggagggt 43426770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33412555 - 33412598
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33412555 taattgaatgtatctaaaaagtggatttttgcttatattagtga 33412598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42449155 - 42449112
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42449155 taattgaatgtatctaaaaagtggatttttgcttatattagtga 42449112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 51617381 - 51617323
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatta 59  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||| |||||    
T  51617381 taattgaatgtatctaaaaagtggatttttggttatattagtgaccggagggtgtatta 51617323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52315480 - 52315538
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatta 59  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||    
T  52315480 taattgaatgtatctaaaaagtggatttttgcttatactagtgatcggagagtgtatta 52315538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50260983 - 50260942
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50260983 taattgaatgtatctaaaaagtggatttttgcttatattagt 50260942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51617421 - 51617478
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    ||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||    
T  51617421 taattgaatgtatctaaaaagtggaattttgcttatattagtgaccggagggtgtatt 51617478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33412515 - 33412478
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33412515 taattgaatgtatctaaaaagtggatttttgcttatat 33412478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29720126 - 29720074
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||| |||||||||||||||||||| |||||||||||| | ||||||    
T  29720126 taattgaatgcatctaaaaagtggatttttgattatattagtgaccggagggt 29720074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 51239333 - 51239385
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| | ||||||||||||||||||||| | ||||||    
T  51239333 taattgaatgtatctaaaaaatagatttttgcttatattagtgaccggagggt 51239385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 52315440 - 52315400
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattag 41  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  52315440 taattgaatatatctaaaaagtggatttttgcttatattag 52315400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36362694 - 36362733
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  36362694 taattgaatgtatctaaaaagtagatttttgcttatatta 36362733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 38455209 - 38455163
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||    
T  38455209 aatgtatctaaaaagtggatttttgcttatattaatgaccggagggt 38455163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17552527 - 17552470
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    ||||||||||||| | ||||||| |||||||||||||||||||| | |||||| ||||    
T  17552527 taattgaatgtattttaaaagtgaatttttgcttatattagtgaccggagggtgtatt 17552470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21403986 - 21404036
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  21403986 taattgaatgtatctaaaa--tggatttttgcttatattagtgaccggagggt 21404036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22173845 - 22173800
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||    
T  22173845 taattgaatgtatctaaaatgtagatttttgcttatattaatgatc 22173800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41349750 - 41349803
Alignment:
Q  1 taattgaatgtatctaaaaag-tggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  41349750 taattgaatgtatctaaaaaaatggatttttgcttatattagtgaccggagggt 41349803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 51239290 - 51239241
Alignment:
Q  4 ttgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  51239290 ttgaatgtatctaaagagtagatttttgcttatattagtgaccggagggt 51239241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29565159 - 29565107
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| |||||||||||||| | ||||||||||||||||||||| | ||||||    
T  29565159 taattaaatgtatctaaaaaattgatttttgcttatattagtgaccggagggt 29565107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29720166 - 29720218
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||| | ||||||    
T  29720166 taattaaatgtatttaaaaagtgaatttttgcttatattagtgaccggagggt 29720218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41349710 - 41349658
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||| | ||||||| |||||||||||||||||||| | ||||||    
T  41349710 taattgaatgtattttaaaagtgaatttttgcttatattagtgaccggagggt 41349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 52168333 - 52168281
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| | ||||||    
T  52168333 taattaaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggt 52168281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52931763 - 52931815
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||| | ||||||    
T  52931763 taattgaatgtatctaaaaagtagatttttacttatatcagtgaccggagggt 52931815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22099829 - 22099786
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||    
T  22099829 taattgaatgtatctaaaaagtagatttttgtttaaattagtga 22099786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29565199 - 29565238
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  29565199 taattgaatgtatgtaaaaagtgaatttttgcttatatta 29565238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 52931691 - 52931648
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||| | || ||||||||||||||||||||    
T  52931691 taattgaatgtatctaaagaatgaatttttgcttatattagtga 52931648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21403946 - 21403897
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagg 51  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||| ||||    
T  21403946 taattgaat-tatctaaaaagtagatttttgtttatattagtgatcggagg 21403897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 52168379 - 52168425
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||||||||| ||| ||| | ||||||    
T  52168379 aatgtatctaaaaagtggatttttgcttatgttaatgaccggagggt 52168425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29720239 - 29720279
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattag 41  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  29720239 taattgaatgcatctaaaaaatgaatttttgcttatattag 29720279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36362654 - 36362602
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||| | ||||||    
T  36362654 taattaaatgtatttaaagagttgatttttgcttatattagtgaccggagggt 36362602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38455255 - 38455307
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||| ||||||||||||||||  ||||||| |||||||||||| | ||||||    
T  38455255 taattaaatgtatctaaaaagtaaatttttgtttatattagtgaccggagggt 38455307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 39579588 - 39579628
Alignment:
Q  6 gaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  39579588 gaatgaatctaaaaagttgatttttgcttataatagtgatc 39579628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34703533 - 34703585
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  34703533 taattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggt 34703585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38238874 - 38238926
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  38238874 taattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggt 38238926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46943994 - 46943942
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  46943994 taattgaatgtatctaaaaagtggatttttgtttatattagtgaccggagggt 46943942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25079257 - 25079214
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  25079257 taattgaatgtatctaaaaagtagatttttgcttatattagtga 25079214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40416996 - 40417039
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  40416996 taattgaatgtatctaaaaagtgaatttttgcttatattagtga 40417039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29498833 - 29498776
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||| ||||    
T  29498833 taattgaatatatctaaaatgtggatttttgcttatattattgatcggagggtttatt 29498776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 4407713 - 4407761
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  4407713 tgaatgtatctaaaaagtggatttttgtttatattagtgaccggagggt 4407761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4406467 - 4406424
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  4406467 taattgaatgtatctaaaaagtgaatttttgcatatattagtga 4406424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25079297 - 25079340
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  25079297 taattgaatgtatctaaaaagtagatttttgtttatattagtga 25079340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22106757 - 22106814
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||| || | ||||| |||||||||||||| |||||| ||||    
T  22106757 taattgaatgtatctaaaaaatgaaattttgtttatattagtgatcagagggtgtatt 22106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38238834 - 38238781
Alignment:
Q  1 taattgaatgtatctaaaaagtg-gatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | ||||||    
T  38238834 taattgaatgtatctaaaaagtgaaatttttgcttatattagtgaccggagggt 38238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40529594 - 40529537
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||||||||||||||||| || | ||||| |||||||||||||| |||||| ||||    
T  40529594 taattgaatgtatctaaaaaatgaaattttgtttatattagtgatcagagggtgtatt 40529537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27554587 - 27554639
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||| | ||||||  |||||||||||||||||||||| ||||||    
T  27554587 taattgaatgtattttaaaagtaaatttttgcttatattagtgatcggagggt 27554639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 1706927 - 1706966
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  1706927 tgaatgtatctaaaaaatgaatttttgcttatattagtga 1706966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21387626 - 21387583
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||    
T  21387626 taattgaatgaatctagaaaatggatttttgcttatattagtga 21387583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22106717 - 22106674
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| |||||||||| | |||||||||||||||||||||    
T  22106717 taattgaatatatctaaaaaatagatttttgcttatattagtga 22106674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29498873 - 29498912
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatatta 40  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  29498873 taattaaatgtatctaaaaaatggatttttgcttatatta 29498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40529634 - 40529677
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||| |||||||||| | |||||||||||||||||||||    
T  40529634 taattgaatatatctaaaaaatagatttttgcttatattagtga 40529677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22281493 - 22281443
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagg 51  Q
    ||||||||| |||||||||| | |||||||| |||||||||||||| ||||    
T  22281493 taattgaatatatctaaaaattagatttttgtttatattagtgatcggagg 22281443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 45000692 - 45000734
Alignment:
Q  2 aattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    |||||||||| ||||||||||  ||||||||||||||||||||    
T  45000692 aattgaatgtgtctaaaaagtacatttttgcttatattagtga 45000734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 716324 - 716365
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagt 42  Q
    |||||||||||||||||||| |  ||||||||||||||||||    
T  716324 taattgaatgtatctaaaaattaaatttttgcttatattagt 716365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 6455643 - 6455696
Alignment:
Q  5 tgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    |||||| | |||||| || ||||||||||||||||||||||| |||||| ||||    
T  6455643 tgaatgaacctaaaatgtagatttttgcttatattagtgatcggagggtgtatt 6455696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1706883 - 1706831
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||| |  |||||| ||||||||||||| | ||||||    
T  1706883 taattgaatgtatctaaaaaataaatttttacttatattagtgaccggagggt 1706831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40416956 - 40416904
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||  ||| |||||||||||||||| ||| | ||||||    
T  40416956 taattgaatgtatctaaattgtgaatttttgcttatattaatgaccggagggt 40416904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 120195 - 120136
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctattat 60  Q
    ||||||||||||||||||||||| | |||||||||||||||||| | |||||| ||||||    
T  120195 taattgaatgtatctaaaaagtgaaattttgcttatattagtgaccggagggtgtattat 120136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 120235 - 120287
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||||  |||||||||||||||||||| | ||||||    
T  120235 taattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggt 120287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 61213 - 61156
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggtctatt 58  Q
    ||||||||||||||||||||  |||||||||||||||||||||| | |||||| ||||    
T  61213 taattgaatgtatctaaaaaagggatttttgcttatattagtgaccggagggtgtatt 61156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 61252 - 61304
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| | ||||||    
T  61252 taattgaatgtatctaaaatgtggatttttgtttatattagtgaccggagggt 61304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54438 - 54397
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagt 42  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  54438 taattgaatgtatctaaaaagtagatttttgcttatattagt 54397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54478 - 54523
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatc 46  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  54478 taattgaatgtatctaaagagtgaatttttgcttatattagtgatc 54523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 246885 - 246937
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  246885 taattgaatgtatctaaaaagtagatttttgcttatattaatgaccagagggt 246937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 246845 - 246802
Alignment:
Q  1 taattgaatgtatctaaaaagtggatttttgcttatattagtga 44  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  246845 taattgaatgtatctaaaaagtaaatttttgcttatattagtga 246802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 4042 - 4092
Alignment:
Q  3 attgaatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||||||||||||||||  |||||||||||||||||||| | ||||||    
T  4042 attgaatgtatctaaaaagtaaatttttgcttatattagtgaccagagggt 4092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 3994 - 3948
Alignment:
Q  7 aatgtatctaaaaagtggatttttgcttatattagtgatccgagggt 53  Q
    ||||||| ||||||||| |||||||||||||||||||| | ||||||    
T  3994 aatgtatttaaaaagtgtatttttgcttatattagtgaccggagggt 3948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University