View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6859_low_5 (Length: 296)

Name: NF6859_low_5
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6859_low_5
NF6859_low_5
[»] chr1 (1 HSPs)
chr1 (1-296)||(46795749-46796044)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 46796044 - 46795749
Alignment:
Q  1 atagttattttcaaaaaatgtacttagtatagttagtacgtggtacttagtggttagttagtctgatcttttcaaagatagagataggtatctcagataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46796044 atagttattttcaaaaaatgtacttagtatagttagtacgtggtacttagcggttagttagtctgatcttttcaaagatagagataggtatctcagataa 46795945  T
Q  101 atgtttatatataagtctatgggactgtacttggaccgttaagtataggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacct 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795944 atgattatatataagtctatgggactgtacttggaccgttaagtataggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacct 46795845  T
Q  201 agggttttcaaccattggttccaaatgttctctttccctaataatttcccttcttcatcatcttcttcttcttaccctaatagtaccctttctttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795844 agggttttcaaccattggttccaaatgttctctttccctaataatttcccttcttcatcatcttcttcttcttaccctaatagtaccctttctttt 46795749  T

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