View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6859_low_9 (Length: 244)
Name: NF6859_low_9
Description: NF6859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6859_low_9 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 38447337 - 38447574
Alignment:
| Q |
8 |
ataggaggttatttggattttttacatgcactctagtctgaaaaatctagctttacataatttggtannnnnnn-atcatgtcattaatttgcattcgtt |
106 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38447337 |
ataggaggttatttggattttttacatacactctagtctgaaaaatctagctttacataatttggtatttttttgatcatgtcattaatttgcattcgtt |
38447436 |
T |
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| Q |
107 |
atttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
38447437 |
atttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaacataaaaagtgtggcttgtcacccttccct |
38447536 |
T |
|
| Q |
207 |
ggcaacattgaactggatgatgggttgaattgtggttc |
244 |
Q |
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| T |
38447537 |
gacaacatggaactggatgatgagttgaatggtggttc |
38447574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 26033358 - 26033212
Alignment:
| Q |
82 |
atcatgtcattaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataa |
181 |
Q |
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||||||||||||||||| ||||||| |||||||| ||||| || ||||||| ||||||||||||||||||||||||||| |||||||| |||||| | | |
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| T |
26033358 |
atcatgtcattaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttga |
26033259 |
T |
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| Q |
182 |
aaagcgtggcttgtcacccttccctggcaacattgaactggatgatg |
228 |
Q |
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| T |
26033258 |
aaggcgtggcttgtcacccttccctgacaacatggaactggatgatg |
26033212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 38180913 - 38181020
Alignment:
| Q |
117 |
cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacattg |
216 |
Q |
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||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||| | |||||| | |
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| T |
38180913 |
cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg |
38181012 |
T |
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| Q |
217 |
aactggat |
224 |
Q |
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||| |||| |
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| T |
38181013 |
aaccggat |
38181020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 38190218 - 38190111
Alignment:
| Q |
117 |
cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacattg |
216 |
Q |
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||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||| | |||||| | |
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| T |
38190218 |
cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg |
38190119 |
T |
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| Q |
217 |
aactggat |
224 |
Q |
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||| |||| |
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| T |
38190118 |
aaccggat |
38190111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 38208137 - 38208244
Alignment:
| Q |
117 |
cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacattg |
216 |
Q |
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||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||| | |||||| | |
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| T |
38208137 |
cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg |
38208236 |
T |
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| Q |
217 |
aactggat |
224 |
Q |
| |
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||| |||| |
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| T |
38208237 |
aaccggat |
38208244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 38217443 - 38217336
Alignment:
| Q |
117 |
cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacattg |
216 |
Q |
| |
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||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||| | |||||| | |
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| T |
38217443 |
cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg |
38217344 |
T |
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| Q |
217 |
aactggat |
224 |
Q |
| |
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||| |||| |
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| T |
38217343 |
aaccggat |
38217336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 38456273 - 38456380
Alignment:
| Q |
117 |
cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacattg |
216 |
Q |
| |
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||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||| | |||||| | |
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| T |
38456273 |
cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg |
38456372 |
T |
|
| Q |
217 |
aactggat |
224 |
Q |
| |
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||| |||| |
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| T |
38456373 |
aaccggat |
38456380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 38342704 - 38342826
Alignment:
| Q |
91 |
ttaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtgg |
190 |
Q |
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|||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||| || ||| | | | |
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| T |
38342704 |
ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattg |
38342803 |
T |
|
| Q |
191 |
cttgtcacccttccctggcaaca |
213 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
38342804 |
cttgtcacccttccctgacaaca |
38342826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 38446897 - 38447019
Alignment:
| Q |
91 |
ttaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtgg |
190 |
Q |
| |
|
|||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||| || ||| | | | |
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| T |
38446897 |
ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattg |
38446996 |
T |
|
| Q |
191 |
cttgtcacccttccctggcaaca |
213 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
38446997 |
cttgtcacccttccctgacaaca |
38447019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 4121599 - 4121714
Alignment:
| Q |
91 |
ttaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtgg |
190 |
Q |
| |
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|||||||||||||||| | |||||||||||| ||||||||| | ||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
4121599 |
ttaatttgcattcgttctctttgtgacagtttcctggaagatcagataatgctatcaagaacttttggaatgcaagaaaaagaaaatataaaaagagtgg |
4121698 |
T |
|
| Q |
191 |
cttgtcacccttccct |
206 |
Q |
| |
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| | ||||||| |||| |
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| T |
4121699 |
cctatcaccctaccct |
4121714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 53351446 - 53351322
Alignment:
| Q |
109 |
ttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctgg |
208 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||||||| |||| |
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| T |
53351446 |
ttttgtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt---atgtcaccctttcctga |
53351350 |
T |
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| Q |
209 |
caacattgaactggatgatgggttgaat |
236 |
Q |
| |
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||| || |||||| |||||| ||||||| |
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| T |
53351349 |
caagatggaactgaatgatgagttgaat |
53351322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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