View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_10 (Length: 554)
Name: NF6860_high_10
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_10 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 7 - 554
Target Start/End: Complemental strand, 3755782 - 3755235
Alignment:
| Q |
7 |
catatgatgaaagagatgcaaaatatgaatttaggagaatggtggctttgtaacactagtatggatcttgaggctgaagcaatttccttatcaccaaaat |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3755782 |
catatgatgaaagagatgcaaaatatgaatttgggagaatggtggctttgtaacactagtatggatcttgaggctgaagcaatttccttatcaccaaaat |
3755683 |
T |
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| Q |
107 |
ttctaccaattggtccattaatggaaaatgagcataacaacatgggatctttgtggcaagaagatgaaacatgcatagaatggttagatcaatatccacc |
206 |
Q |
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| T |
3755682 |
ttctaccaattggtccattaatggaaaatgagcataacaacatgggatctttgtggcaagaagatgaaacatgcatagaatggttagatcaatatccacc |
3755583 |
T |
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| Q |
207 |
taaatctgtcatatatgtttcatttggtagcttaatatcaattggtccaaaccaattcaaagaattagctctagggcttgatctccttaaaaggcctttt |
306 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
3755582 |
taaatctgtcatatatgtttcatttggtagtttaatatcaattggtccaaatcaattcaaagaattagctctagggcttgatcttcttgaaaggcctttt |
3755483 |
T |
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| Q |
307 |
ctttgggttgtacgtaaagataagggtaatgagaaaaaatatgcatacccaagtgaattcaaaggaagtcaaggtaaaattgtaggttggtcaccacaaa |
406 |
Q |
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| T |
3755482 |
ctttgggttgtacgtaaagataagggtaatgaaacaaaatatgcatacccaagtgaattcaaaggaagtcaaggtaaaattgtaggttggtcaccacaaa |
3755383 |
T |
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| Q |
407 |
agaagattttgannnnnnnttcaatagtatgtttcactacacattgtggttggaattctactatagaaagtgtgtgtaatggggtacctttgttttgttt |
506 |
Q |
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| T |
3755382 |
agaagattttgacccacccttcaatagtatgtttcattacacattgtggttggaattctactatagaaagtgtgtgtaatggggtacctttgttgtgttt |
3755283 |
T |
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| Q |
507 |
gccattttttagtgatcaacttatgaacaagacatatatttgtgatgt |
554 |
Q |
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| T |
3755282 |
gccattttttagtgatcaacttatgaacaagacatatatttgtgatgt |
3755235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 3789753 - 3789367
Alignment:
| Q |
17 |
aagagatgcaaaatatgaatttaggagaatggtggctttgtaacactagtatggatcttgaggctgaagcaatttccttatcaccaaaatttctaccaat |
116 |
Q |
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||||||| |||| ||| ||||| ||||||||||||||||| ||||||| | ||||||||| ||| | | ||||| |||||||||| || |||||||| |
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| T |
3789753 |
aagagatacaaactataaattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaat |
3789654 |
T |
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| Q |
117 |
tggtccattaatggaaaatgagcataacaacatgggatctttgtggcaagaagatgaaacatgcatagaatggttagatcaatatccacctaaatctgtc |
216 |
Q |
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| T |
3789653 |
tggtccattgatggaaagt---aacaacaacaaaagttcattatggcaagaagactcaacttgcttagaatggttagataaacaagcacctcaatcagtc |
3789557 |
T |
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| Q |
217 |
atatatgtttcatttggtagcttaatatcaattggtccaaaccaattcaaagaattagctctagggcttgatctccttaaaaggccttttctttgggttg |
316 |
Q |
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| T |
3789556 |
atatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttg |
3789457 |
T |
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| Q |
317 |
tacgtaaagataagggtaatgagaaaaaatatgcatacccaagtgaattcaaaggaagtcaaggtaaaattgtaggttggtcaccacaaa |
406 |
Q |
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| T |
3789456 |
ttcgtcctagtaatgacaataaggtaaactatacataccctaatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaa |
3789367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 406
Target Start/End: Original strand, 3800371 - 3800740
Alignment:
| Q |
34 |
aatttaggagaatggtggctttgtaacactagtatggatcttgaggctgaagcaatttccttatcaccaaaatttctaccaattggtccattaatggaaa |
133 |
Q |
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| T |
3800371 |
aattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaa |
3800470 |
T |
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| Q |
134 |
atgagcataacaacatgggatctttgtggcaagaagatgaaacatgcatagaatggttagatcaatatccacctaaatctgtcatatatgtttcatttgg |
233 |
Q |
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| T |
3800471 |
gt---aacaacaacaaaagttcattatggcaagaagactcaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttgg |
3800567 |
T |
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| Q |
234 |
tagcttaatatcaattggtccaaaccaattcaaagaattagctctagggcttgatctccttaaaaggccttttctttgggttgtacgtaaagataagggt |
333 |
Q |
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|||||| || ||| | | ||||||||| || ||| |||| ||||| |||||||| ||| | | |||||||||||||||||| ||| ||| | |
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| T |
3800568 |
tagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgac |
3800667 |
T |
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| Q |
334 |
aatgagaaaaaatatgcatacccaagtgaattcaaaggaagtcaaggtaaaattgtaggttggtcaccacaaa |
406 |
Q |
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| T |
3800668 |
aataaggtaaactatacataccctaatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaa |
3800740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 554
Target Start/End: Complemental strand, 3767989 - 3767883
Alignment:
| Q |
448 |
cattgtggttggaattctactatagaaagtgtgtgtaatggggtacctttgttttgtttgccattttttagtgatcaacttatgaacaagacatatattt |
547 |
Q |
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||||||||||||||||||||||||||| |||| | | ||| ||||||| || |||| ||||||| | ||||||| ||| ||||||| ||||||||| |
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| T |
3767989 |
cattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccatttgcaactgatcaatttacgaacaagtcatatattt |
3767890 |
T |
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| Q |
548 |
gtgatgt |
554 |
Q |
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| T |
3767889 |
gtgatgt |
3767883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 3780555 - 3780479
Alignment:
| Q |
160 |
tggcaagaagatgaaacatgcatagaatggttagatcaatatccacctaaatctgtcatatatgtttcatttggtag |
236 |
Q |
| |
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||||||||||| | |||||| |||| ||| | ||||||||||||||| |||| ||| ||||||||| |||||||| |
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| T |
3780555 |
tggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtag |
3780479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 3780623 - 3780587
Alignment:
| Q |
89 |
tttccttatcaccaaaatttctaccaattggtccatt |
125 |
Q |
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| T |
3780623 |
tttccatatcaccaaagtttctaccaattggtccatt |
3780587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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