View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_15 (Length: 510)
Name: NF6860_high_15
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Original strand, 29476660 - 29477147
Alignment:
| Q |
20 |
atacaatggaaattctcattctagtcctctacttggtcttcactaagaatacttcacaatatagacacttatatgtatgtatactgtagaagaattccat |
119 |
Q |
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| T |
29476660 |
atacaatggaaattctcattctagtcctctacttggtcttcactaagaatacttcacaatatagacacttatatgtgtgtatactgtagaagaattccat |
29476759 |
T |
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| Q |
120 |
tcagacatgactttcgatacaaaaatgatgcaaccaattttatttttctttctccaacacgtacctttattttctaaatcccttgtaatggtagcttcag |
219 |
Q |
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| T |
29476760 |
tcagacatgactttcgatacaaaaatgatgcaaccaattttatttttctttctccaacacgtacctttattttctaaatcccttgtaatggtagcttcag |
29476859 |
T |
|
| Q |
220 |
taggagcaaaaactggagcttgagggtacattgatttccaatcttttcccctccaaatcagtacttgttcatcatcgaaagacagtagcacgcaaggaac |
319 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29476860 |
caggaggaaaaactggagcttgagggtacattgatttccaaccttttcccctccaaatcagtacttgttcatcatcgaaagacagtagcacacaaggaac |
29476959 |
T |
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| Q |
320 |
caaatcctgccaaagcaaaaagatcaaattgcatgccatataatactactagataataattgcggcaatactaaaggatacaaacacgatgcatgctact |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29476960 |
taaatcctgccaaagcaaaaagatcaaattgcatgccataaaatactactagataataattgcggcaatacttaaggatacaaacacgatgcatgctact |
29477059 |
T |
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| Q |
420 |
atacactgcacatgacctgttttattatcattatgtcctatgaaacaggttcatcatcaacatatcatttacaaagtccaaagcatat |
507 |
Q |
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| T |
29477060 |
atacactgcacatgacctgttttattaacattatgtcctatgaaacaggttcatcatcgacatatcatttacaaagtccaaagcatat |
29477147 |
T |
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