View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_high_17 (Length: 478)

Name: NF6860_high_17
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_high_17
NF6860_high_17
[»] chr6 (2 HSPs)
chr6 (1-458)||(7928645-7929112)
chr6 (386-451)||(7927036-7927101)
[»] chr8 (1 HSPs)
chr8 (418-459)||(38790570-38790611)
[»] chr7 (2 HSPs)
chr7 (418-459)||(28914875-28914916)
chr7 (419-459)||(41417274-41417314)
[»] chr4 (1 HSPs)
chr4 (418-459)||(52031263-52031304)
[»] chr2 (3 HSPs)
chr2 (418-459)||(5207148-5207189)
chr2 (418-459)||(42541211-42541252)
chr2 (419-459)||(44187760-44187800)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 7928645 - 7929112
Alignment:
Q  1 taacattctcgaaccttttggttgttccacagaaaaataaaaataaattgacataatcaacgacagctatgataacattatcaaaaccaaccaagatgac 100  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  7928645 taacattctcgaaccttttggttgtaccgcagaaaaataaaaataaagtgacataatcaaggacagctatgataacatcatcaaagccaaccaagatgac 7928744  T
Q  101 atcataggacaacttacttttaatgacttcagacttaatcttcatactttaatttaagcttgatcttcaagtttctcttattctataaatagagggagaa 200  Q
    |||||||||||||||||||   ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7928745 atcataggacaacttacttccgatggcttcagacttaatcttcaaactttaatttaagcttgatcttcaagtttctcttattctataaatagagggagaa 7928844  T
Q  201 tttaccattcaagagagaacattctagtggttatgattcattttaacattggtagaaaatcaacaaaagaccctctcttt------tnnnnnnnnnnnnn 294  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |                 
T  7928845 tttaccattcaagagagaacattctggtggttatgattcattttaacattggtagaaaatcaacaaaagaccctctcttttaaaaataaaaaaaataaaa 7928944  T
Q  295 nntaagacaacaacaaaagatatgcattaaggaaggaaccactctattgtgaagtagtaatacatattgtttaagtgaattgtttgacaagtagtta--- 391  Q
      ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||||       
T  7928945 aataagacaacaacaaaagatatgcattaaggaaggaaccactcggttgtgaagtagtaatacatattgtttgagtgaattgtttgacaaatagttagtt 7929044  T
Q  392 -gtttgtgttgagtttgtaagttgattgaaattcatctttaaagtgagtaagtggggtgtctggggtt 458  Q
     |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  7929045 tgtttgtgttgagtttgtaagttgattgaaattcatctttaaagtgaataagtgggatgtatggggtt 7929112  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 7927036 - 7927101
Alignment:
Q  386 tagttagtttgtgttgagtttgtaagttgattgaaattcatctttaaagtgagtaagtggggtgtc 451  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  7927036 tagtttgtttgtgttgagtttgtaagttgattgaaattcatctttaaagtgaataagtgggatgtc 7927101  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 38790570 - 38790611
Alignment:
Q  418 gaaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  38790570 gaaattcacttttaaagtgaataagtggggtgtctggggttc 38790611  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 28914875 - 28914916
Alignment:
Q  418 gaaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    |||||||| ||||||||||| ||||||||||||| |||||||    
T  28914875 gaaattcacctttaaagtgaataagtggggtgtccggggttc 28914916  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 41417274 - 41417314
Alignment:
Q  419 aaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  41417274 aaattcacttttaaagtgaataagtggggtgtctggggttc 41417314  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 52031304 - 52031263
Alignment:
Q  418 gaaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  52031304 gaaattcacttttaaagtgaataagtggggtgtctggggttc 52031263  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 5207189 - 5207148
Alignment:
Q  418 gaaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  5207189 gaaattcatcttaaaggtgaataagtggggtgtctggggttc 5207148  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 42541252 - 42541211
Alignment:
Q  418 gaaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    |||||||| ||| || ||||||||||||||||||||||||||    
T  42541252 gaaattcaccttaaaggtgagtaagtggggtgtctggggttc 42541211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Complemental strand, 44187800 - 44187760
Alignment:
Q  419 aaattcatctttaaagtgagtaagtggggtgtctggggttc 459  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  44187800 aaattcacttttaaagtgaataagtggggtgtctggggttc 44187760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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