View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_2 (Length: 784)
Name: NF6860_high_2
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 265 - 734
Target Start/End: Original strand, 28536380 - 28536849
Alignment:
| Q |
265 |
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttcatcagtataaagtaatgctctgaaatttcaaa |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28536380 |
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaattcatttcatcagtataaagtaatgctctgaaatttcaaa |
28536479 |
T |
|
| Q |
365 |
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaagaaagcaagaaggaagaacgacacaaaaa |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28536480 |
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaagaacgcaagaaggaagaacgacacaaaaa |
28536579 |
T |
|
| Q |
465 |
gtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536580 |
gtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta |
28536679 |
T |
|
| Q |
565 |
cgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca |
664 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536680 |
cgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca |
28536779 |
T |
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| Q |
665 |
aattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
734 |
Q |
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| T |
28536780 |
aattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 28536057 - 28536317
Alignment:
| Q |
5 |
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536057 |
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt |
28536156 |
T |
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| Q |
105 |
gaacatctgtactagaccaggcagctaccttgcaaatacatgctagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca |
204 |
Q |
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| T |
28536157 |
gaacagctgtactagaccaggcagctaccttgcaaatacatgttagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca |
28536256 |
T |
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| Q |
205 |
gccacataggtgcaaaatgtgggggaatgcattctctcaattgtaatttaacacgaggata |
265 |
Q |
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| T |
28536257 |
gccacataggtgcaaaatgtgggggaatggattctctcaattgtaatttaacacgaggata |
28536317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 668 - 776
Target Start/End: Original strand, 28536833 - 28536941
Alignment:
| Q |
668 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
767 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
|
| Q |
768 |
cacaggttc |
776 |
Q |
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||||||||| |
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| T |
28536933 |
cacaggttc |
28536941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 54492190 - 54492156
Alignment:
| Q |
286 |
acactttaccttctcatgtgtaaattacacatgag |
320 |
Q |
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| T |
54492190 |
acactttaccttctcatgtgaaaattacacatgag |
54492156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 17429217 - 17429155
Alignment:
| Q |
270 |
tgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttc |
332 |
Q |
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|||||||| | |||| |||||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
17429217 |
tgaatggtaagagatcacactttagtatctcatgagtaaattacacatgagagaatccatttc |
17429155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 42971584 - 42971534
Alignment:
| Q |
271 |
gaatggtgaaagatgacactttacct-tctcatgtgtaaattacacatgag |
320 |
Q |
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||||||||| |||||||||||||||| |||||||| |||||||||||||| |
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| T |
42971584 |
gaatggtgagagatgacactttacctctctcatgtaaaaattacacatgag |
42971534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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