View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_20 (Length: 455)
Name: NF6860_high_20
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Original strand, 2299269 - 2299702
Alignment:
| Q |
20 |
aatgtactccatgaagatgaagatgtaaaagtgtcagcttctgtttgaaaatgatgcatcaactaaagtgaagataattaaagatggggattcaccataa |
119 |
Q |
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| T |
2299269 |
aatgtactccatgaagatgaagatgtaaaagtgtcaacttctgtttgaaaatgatgcatcaattaaagtgaagataattaaagatggggattcaccatat |
2299368 |
T |
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| Q |
120 |
cattctgtttgtattaatgaaaatagtgtctttataattataaacatttacaacatgtggtagttcgtnnnnnnntatgctcgcatgttaggggtggagt |
219 |
Q |
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| T |
2299369 |
cattctgtttgtattaatgaaaatagtgtctttataattataaacatttacaacatgtggtagttcgtaaaaaaatatgctagcat-ttaggggtggagt |
2299467 |
T |
|
| Q |
220 |
attatcactattttattgataataactaattcacttaaatatgtgattagtctctgcgttttcattcaattttggtattggtctctgcacctttttgttc |
319 |
Q |
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| T |
2299468 |
attatcactattttattaataataactaattcacttaaatatgtgattaatctgtgcgctttcattcaattttggcattcctctctgcacctttttgttt |
2299567 |
T |
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| Q |
320 |
gacattgataataactagcttaagcacaatttcgtgtaagaaagctacctaaatgacattgccatatggaatgcaatgaataatcgcaatatataggaac |
419 |
Q |
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| T |
2299568 |
ggcattgataataactagtttgagcacaatttcgtgtaagaaagctacctaaatgacattgccatatggaatgcaatgaataattgcaatatataggaac |
2299667 |
T |
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| Q |
420 |
aaaggaccaggttcaaattaaaatttaacaccaaa |
454 |
Q |
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| T |
2299668 |
aaatgaccaggttcaaattaaaatttaacaccaaa |
2299702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 30419350 - 30419289
Alignment:
| Q |
254 |
ttaaatatgtgattagtctctgcgttttcattcaattttggtattggtctctgcaccttttt |
315 |
Q |
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| T |
30419350 |
ttaaatatgtgattagtctatgcattttcattcaattttggcattaatctctgcactttttt |
30419289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 18046046 - 18046108
Alignment:
| Q |
253 |
cttaaatatgtgattagtctctgcgttttcattcaattttggtattggtctctgcaccttttt |
315 |
Q |
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| T |
18046046 |
cttaaatatgtgattagtccctgcactttcatcaaattttggcattggtccctgcactttttt |
18046108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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