View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_23 (Length: 441)
Name: NF6860_high_23
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 15211534 - 15211121
Alignment:
| Q |
18 |
tttacatggatcattgattagtcattattcacagtagggtgtagagacctcaagaaactggttattaatgataataaatttaaaattctggcacttcttt |
117 |
Q |
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| T |
15211534 |
tttacatggatcattgattagtcattattcacagtagggtgtagagacctcaagaaactggtaattaatgataataaatttaaaattctggcacttcttt |
15211435 |
T |
|
| Q |
118 |
cagttattattttagttatcatcaataagaaaatcaatagtccagatgttgaatgctgatactagaagtacagctagttaccaggtatgaaaatcaatag |
217 |
Q |
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| T |
15211434 |
cagttattattttagttatcatcaataagaaaatcaatagtccagatgttgaatgttgatactagaagtacagctagttaccaggtatgaaaatcaatag |
15211335 |
T |
|
| Q |
218 |
ccaacataaaagaaaagttgatgcatatatattcagacctcctttgcaacagcacgagctgttcgccagttatctcctgtaaccataacaggtatgacac |
317 |
Q |
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| T |
15211334 |
ccaacataaaagaaaagttgatgcatatatattcagacctcctttgcaacagcacgagctgttcgccagttatctcctgtaaccataacaggtatgacac |
15211235 |
T |
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| Q |
318 |
ccattttctggaggccctctataaccacagaagcttctctctttagtgggtctgcaacccccaaaactccgattaatatatcatcatatgatactagtat |
417 |
Q |
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| T |
15211234 |
ccattttctggaggccctctataaccacagaagcttctctctttagtgggtctgcaacccccaaaactccgattaatatatcatcatatgatactagtat |
15211135 |
T |
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| Q |
418 |
ccctgtctgcgcat |
431 |
Q |
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| T |
15211134 |
ccctgtctgcgcat |
15211121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 396
Target Start/End: Complemental strand, 38748560 - 38748408
Alignment:
| Q |
244 |
atatattcagacctcctttgcaacagcacgagctgttcgccagttatctcctgtaaccataacaggtatgacacccattttctggaggccctctataacc |
343 |
Q |
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|||||| || |||||||| |||||||| |||||||||| ||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||| ||| |
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| T |
38748560 |
atatatacaaacctccttggcaacagctcgagctgttctccagttatcgcctgtaaccattacaggcgtgattcccattttctggaggccctctacaaca |
38748461 |
T |
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| Q |
344 |
acagaagcttctctctttagtgggtctgcaacccccaaaactccgattaatat |
396 |
Q |
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| T |
38748460 |
acagaagcttctcgcttaagtgagtctgcaacccctaagactccaatcaatat |
38748408 |
T |
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