View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_27 (Length: 396)
Name: NF6860_high_27
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_27 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 156 - 396
Target Start/End: Original strand, 43234917 - 43235157
Alignment:
| Q |
156 |
tcgttaacatttacataaagtaaatatagaaatactagcttgaaaattatggggtatatagtcnnnnnnnnnnnngagtgtgtgaagcgttgccgtaata |
255 |
Q |
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| T |
43234917 |
tcgttaacatttccctaaactaaatatagaaatactatcttgaaaattatggggcatatagtctttttgatctttgagtgtgtgaagcgttgccgtaata |
43235016 |
T |
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| Q |
256 |
gcatctgaatgcatcgaaattgcaagtaaacacgtttgactctttagttagtcagccattttgataatcttattagtcgttttagtttttggatgtattt |
355 |
Q |
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| T |
43235017 |
gcatctgaatgcatcgaaattgcaagtaaacacgtttgactctttagttagtcagccattttgataatcttattagtcgttttagttttcatatgtattt |
43235116 |
T |
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| Q |
356 |
ttcgttaatcaatttagttcttaaaattataaataaaagaa |
396 |
Q |
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| T |
43235117 |
ttcgttaatcaatttagtccataaaattataaataaaagaa |
43235157 |
T |
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Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 43234688 - 43234775
Alignment:
| Q |
56 |
taaatacatatttaaccttagatagttaaatgctatcatgttttctaagagcatacgataataaactaacgggtcttgttaacgagtg |
143 |
Q |
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| T |
43234688 |
taaatacatatttaaccttagctaggtaaatgctatcatgtgttctaagagcatacgataataaactaacgggtcttgttaacgagtg |
43234775 |
T |
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