View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_28 (Length: 387)
Name: NF6860_high_28
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 36515505 - 36515855
Alignment:
| Q |
32 |
tgtaagaggttaaaactcttaaatacggtttgatctcaaccacatatgtacatccaatttccacaacatcaatatcaaccctcacctttaatatatgaaa |
131 |
Q |
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| T |
36515505 |
tgtaagaggttaaaactcttaaatacggtttgatctcaaccacatatgtacatccaatttccacaacatcaatatcaaccctcacctttaatatatgaaa |
36515604 |
T |
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| Q |
132 |
ttcttaat-tgggtatgatagcatattaaataggctccaatttcatctcaaaaattagctcagaagatgaaggtgtgaatgtgagaacacaaatgttaaa |
230 |
Q |
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| T |
36515605 |
ttcttaatctgggtatgatagcatattaaataggctccaatttcatctcaaaaattagctcagaagatgaaggtgtgaatgtgagaacacaaatgttaaa |
36515704 |
T |
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| Q |
231 |
tgggcgcattccatgctaagaaactatttttaatactcacgtgaaacttgggttaaattctcacattatcatattttacactgctcaattactatgttaa |
330 |
Q |
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| T |
36515705 |
tgggcgcattccatgctaagaaactatttttaatactcacgtgaaacttgggttaaattctcacattatcatattttacactgctcaattactatgttaa |
36515804 |
T |
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| Q |
331 |
atgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactc |
381 |
Q |
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| T |
36515805 |
atgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactc |
36515855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 201 - 381
Target Start/End: Complemental strand, 36805593 - 36805400
Alignment:
| Q |
201 |
aggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactcac-------------gtgaaacttgggttaaa |
287 |
Q |
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| T |
36805593 |
aggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactcactttcatgtctcacgtgaaacttgagttaaa |
36805494 |
T |
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| Q |
288 |
ttctcacattatcatattttacactgctcaattactatgttaaatgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactc |
381 |
Q |
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| T |
36805493 |
ttctcacattatcatactttacgccgttaaattactatgttaaatgaatttgaatctcattaaagttagctcacaagatgatgatgatcaactc |
36805400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 36805721 - 36805675
Alignment:
| Q |
32 |
tgtaagaggttaaaactcttaaatacggtttgatctcaaccacatat |
78 |
Q |
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| T |
36805721 |
tgtaagagattaaaactcttaaatatggtttgatctcaaccacatat |
36805675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 36805679 - 36805625
Alignment:
| Q |
152 |
catattaaataggctccaatttcatctcaaaaattagctcagaagatgaaggtgt |
206 |
Q |
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| T |
36805679 |
catattaaataagcttcaatttcatcccaaaatttagctcaaaagatgaaggtgt |
36805625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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