View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_29 (Length: 386)
Name: NF6860_high_29
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 382
Target Start/End: Original strand, 7928188 - 7928555
Alignment:
| Q |
4 |
gaagagaatcatcgtcgatggtggagccgacaccagaagataagcatcgctagctagcattaaccttaaaaagaacaagtgtgatgagtaagaatcgcag |
103 |
Q |
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| T |
7928188 |
gaagagaatcattgtcgatggtggagccgacaccagaagataagcatagctagctagcattaaccttaaaaagaacaagtgtgatgagcaagaatcgcag |
7928287 |
T |
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| Q |
104 |
ggaggaagtaaattccatggcagtttgagaaacgtagattaagttttagaggagtgtcaaatctaatcaaatgaaaatgaaaatgaaaatgtaagtgaag |
203 |
Q |
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| T |
7928288 |
ggaggaagaaaattccatggtagtttgagaaacgtagattaagttttagaggagtgtcaaatctaatc------------aaatgaaaatgtaagtgaag |
7928375 |
T |
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| Q |
204 |
tatttgtatgaggttgctagtgagaataaaaatatgaaactgttggacaagcgtgtgtaagtttgttaggtttctattagaagcttaaaagcgtggcaaa |
303 |
Q |
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| T |
7928376 |
tatttgtatgaggttgctggtgagaataaaaatatgaagctgtcggacaagcgtgtgtaagtttgttaggtttctattagaggcttaaaagcgtggcaaa |
7928475 |
T |
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| Q |
304 |
attttttgtattacactgattttgttcaagcaaatttg-aaaatcctaaaaataagttataatttgtctcattttattgt |
382 |
Q |
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| T |
7928476 |
aaatttggtactacactaattttgttcaagcaaatttgaaaaatcctaaaaataagttataatttgtctaattttattgt |
7928555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 24929726 - 24929766
Alignment:
| Q |
342 |
aaaatcctaaaaataagttataatttgtctcattttattgt |
382 |
Q |
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| T |
24929726 |
aaaatcctaaaaataagtgataatttgtctaatttcattgt |
24929766 |
T |
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