View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6860_high_33 (Length: 365)
Name: NF6860_high_33
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 43116939 - 43117268
Alignment:
| Q |
10 |
gacatcagatgtaggttcaacgagtcttatgctgtgaattgtttggaagacatttcaagtattaacttcaaagaattaagttcagaagatgttaggagat |
109 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43116939 |
gacaacagatgtaggttcgacgagtcttatgttgtgaattgtttggaagacatttcaagtattaacttcaaagaattaagttcagaagatgtcaggagat |
43117038 |
T |
|
| Q |
110 |
accattttgtagatgttgctgtagcatttactttttataattggtatgctagctgtcatggttttgctgcaagaaaaagcaaggtaatgagaagcaaaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43117039 |
accattttgtagatgttgctgtagcatttactttttataattggtatgctagctgtcatggttttgctgcaagaaaaagcaaggtaatgagaagca---- |
43117134 |
T |
|
| Q |
210 |
tgaaattggtgaactaactcaacagacacttgtttgttatcgacaagggtttacagaggaaaaaagttgcagctcatcaactagaaagcgagtaccgaaa |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43117135 |
--aaagtggtgaactaactcaacagacacttgtttgttatcgacaagggtttacagagaaaaaaagttgcagctcatcaactagaaagcgagtaccgaaa |
43117232 |
T |
|
| Q |
310 |
gctcgtgtaagatgtggttgtgaagcaaaatgtcgt |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43117233 |
gctcgtgtgagatgtggttgtgaagcaaaatgtcgt |
43117268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 17466917 - 17467237
Alignment:
| Q |
16 |
agatgtaggttcaacgagtcttatgctgtgaattgtttggaagacatttcaagtattaacttcaaagaattaagttcagaagatgttaggagataccatt |
115 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17466917 |
agatgtaggttcgacgattcttatgttgtgaattgtttggaagacatttcaagtattaacttcaaagaattaagttcagaagatgttaagagataccatt |
17467016 |
T |
|
| Q |
116 |
ttgtagatgttgctgtagcatttactttttataattggtatgctagctgtcatggttttgctgcaagaaaaagcaaggtaatgagaagcaaaattgaaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
17467017 |
ttgtagatgttgctgtagcatttactttttataattggtatgctagctgtcatgggtttgctgcaagaaaaagcatggtaatgagatgca------aaag |
17467110 |
T |
|
| Q |
216 |
tggtgaactaactcaacagacacttgtttgttatcgacaagggtttacagaggaaaaaagttgcagctcatcaactagaaagcgagtaccgaaagctcgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17467111 |
tggtgaactaactcaacagacacttgtttgttatcgacaagggtttatagaggaaaaaagttgcagctcattaactagaaagcgagtaccgaaagctcgt |
17467210 |
T |
|
| Q |
316 |
gtaagatgtggttgtgaagcaaaatgt |
342 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
17467211 |
gtgagatgtggttgtgaagcaaaatgt |
17467237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University