View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_high_4 (Length: 678)

Name: NF6860_high_4
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_high_4
NF6860_high_4
[»] chr7 (1 HSPs)
chr7 (1-671)||(29563206-29563876)


Alignment Details
Target: chr7 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Original strand, 29563206 - 29563876
Alignment:
Q  1 taaaattttaaaatttccacaggtttcttatatttcccaaaactggcctgttcaatatgtggcagctagtcaggatggaatgtacttagcggttgctggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29563206 taaaattttaaaatttccacaggtttcttatatttcccaaaactggcctgttcaatatgtggcagctagtcaggatggaatgtacttggcggttgctggt 29563305  T
Q  101 cttcatggtttgatattgtatgatatacgaatgaaaagatggagagtctttggagatgttacccaggaacaaaagattcagtgtaagggcttgctatggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563306 cttcatggtttgatattgtatgatatacgaatgaaaagatggagagtctttggagatgttacccaggaacaaaagattcagtgtaagggcttgctatggc 29563405  T
Q  201 tgggaaagattgtcgttgtctgcaactatattgattcttccaacacgtgagatacttttatttgcttacgtatttcatgtggttggttcttgcaaattat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563406 tgggaaagattgtcgttgtctgcaactatattgattcttccaacacgtgagatacttttatttgcttacgtatttcatgtggttggttcttgcaaattat 29563505  T
Q  301 attgtttgtcaaaaataannnnnnnagctgattgttgtttaacaatgtacatgcctggaaaagcctgatttaaaggatgttcagttttttacccccttat 400  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  29563506 attgtttgtcaaaaataatttttttagctgattgttgtttaacaatgtacatgcctggaaaagcctgatttaaaggatgttcagttttttacccacttaa 29563605  T
Q  401 tttgcttttcaaagtctaggtcagattgaacttaaaactataatttttgcaacattaactgtatcattctgcaacatacgaaacattttattctacattc 500  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563606 tttgcttttcaaagtctaggtctgattgaacttaaaactataatttttgcaacattaactgtatcattctgcaacatacgaaacattttattctacattc 29563705  T
Q  501 aatggtctcttacgtctccttatttatctcaggtatgaattgctcttttacccaagatatcaccttgatcaaagctcattgctctgtcgaaaaccattgt 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563706 aatggtctcttatgtctccttatttatctcaggtatgaattgctcttttacccaagatatcaccttgatcaaagctcattgctctgtcgaaaaccattgt 29563805  T
Q  601 ttgcgaaaccaattgtgatggatgtgtaccaagattatatacttgttacgtatagaccatttgatgtccat 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563806 ttgcgaaaccaattgtgatggatgtgtaccaagattatatacttgttacgtatagaccatttgatgtccat 29563876  T

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