View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_40 (Length: 322)
Name: NF6860_high_40
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_40 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold1825 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 37639956 - 37639650
Alignment:
| Q |
15 |
gtgtttaagtatagggtgtgagtggtaaagtttgagagagattgttcgttgacattatttcttattgctttcatgattagaatgaggtcgtcgatgaatt |
114 |
Q |
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| T |
37639956 |
gtgtttaagtacagggtgtgagtggtaaagttagagagagattgttcgttgacattatttcctgttgctttcatgactagaatgaggtcgtcgatgaatt |
37639857 |
T |
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| Q |
115 |
attgacatgtatgtatatttataattactcgcaattaagttagcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctcc |
214 |
Q |
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| T |
37639856 |
attgacatgtatgtatatttatgattactcgcaattaagttatcaattaattagattgtcctcatcattgctatttg-aacctgaaaaatggaagcctcc |
37639758 |
T |
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| Q |
215 |
ttatagatttattgtgccggtaaatgtggggtttttaggacatcgacaaaatgtgaccgttttagatatttgttgttgagtcattaaagtttttacgatg |
314 |
Q |
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| T |
37639757 |
ttatagatttattgtgccggtaaatgtggagtttttaggacatcgacaaaatgtgaccgttttagatatttgttgttgagtcattaaagtttttacgatg |
37639658 |
T |
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| Q |
315 |
ctagtatt |
322 |
Q |
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|||||||| |
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| T |
37639657 |
ctagtatt |
37639650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 37634303 - 37634119
Alignment:
| Q |
138 |
attactcgcaattaagttagcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgccggtaa |
237 |
Q |
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| T |
37634303 |
attactcgcaattaagttatcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgccagtaa |
37634204 |
T |
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| Q |
238 |
atgtggggtttttaggacatcgacaaaatgtgaccgttttagatatttgttgttgagtcattaaagtttttacgatgctagtatt |
322 |
Q |
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| T |
37634203 |
acgtggagtttttaggacatcgacaaaatgtgaccgttttagatatttgttgttgagtcattaaagtttttacgatgctagtatt |
37634119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1825 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold1825
Description:
Target: scaffold1825; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 95 - 1
Alignment:
| Q |
138 |
attactcgcaattaagttagcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgcc |
232 |
Q |
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| T |
95 |
attactcgcaattaagttatcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgcc |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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