View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_5 (Length: 656)
Name: NF6860_high_5
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 24 - 644
Target Start/End: Complemental strand, 32695884 - 32695282
Alignment:
| Q |
24 |
gccatattcattctcaatctccaacgccattttcccaactacaaccgatttaacactcttggagtacgaactattaactcttcattttctataagtaagt |
123 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32695884 |
gccatattcattctcaatctccaacaccattttcccaactacaaccgatttaacactcttggagtacgaactatcaactcttcattttctataagtaagt |
32695785 |
T |
|
| Q |
124 |
aaaccttatttcacttagccaaataaattctacatgcaccctcactctccgtagagtttaactaaatattcgattttagaaattaggcaaaaatatggag |
223 |
Q |
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||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32695784 |
aaaccttatgtcacttggccaaataaattctacatgcatcctcactctccgtagagtttaactaaagattcgattttagaaattaggcaaaaatatggag |
32695685 |
T |
|
| Q |
224 |
taccactgtatatgatatatagtataattaatcacatatttaaatattttagcctactttaaaaatattaattgaattgaaaacattgtatagtatggat |
323 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32695684 |
taccactatatatgatatatagta----taatcacatatttaaatattttagcctactttaaaaatattaattgaattgaaaacattgtatagtatggat |
32695589 |
T |
|
| Q |
324 |
ttatgatttaattatttgctatattacgatgaatatattatagtttatgcagggccgggtaatcggttgtgcaaattacaaaccaatatcatggagggtc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32695588 |
ttatgatttaattatttgctatattacgatgaatatattatagtttatgcagggccgggtaattggttgtgcaaattacaaaccaatatcatggagggtc |
32695489 |
T |
|
| Q |
424 |
aaaattttgagtagtctagtgnnnnnnngtcaagtagtctagtgaccaccgttaaagtgaataagtgtgatgtctgggttcgaattcgaacctcgacccc |
523 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
32695488 |
aaaattttgagtagtctagtgtttttttgtcaagtagtctagtgaccaccgttaaagtgaataagtgtggtgtttggg-----attcgaacctcgacccc |
32695394 |
T |
|
| Q |
524 |
tacatgttttacatgtttacaatgcattgttcctattaactagactatgttcgctgggactagactgctaaagtgtttaagtgagtctggtttatgatta |
623 |
Q |
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|||||||||||||| ||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
32695393 |
---------tacatgtttacaatatattgttcctatcaactgaactatgttcactgggacaagactgctaaagtgtttaagtcagtttggtttatgatta |
32695303 |
T |
|
| Q |
624 |
tatactttgtatgatgtccat |
644 |
Q |
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||||||||||||||||||||| |
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| T |
32695302 |
tatactttgtatgatgtccat |
32695282 |
T |
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