View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_58 (Length: 246)
Name: NF6860_high_58
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 24414185 - 24414321
Alignment:
| Q |
1 |
aaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataacttcaataggatttaagaaatacgctccttcacaataggata |
100 |
Q |
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| T |
24414185 |
aaataagcaaatgaagacatataggtctggaaattggttcttgcctattcaccaataacttcaataggatttaagaaatatgttccttcacaataggata |
24414284 |
T |
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| Q |
101 |
aaagacgggactgatttatctcaaatcaactaataat |
137 |
Q |
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| T |
24414285 |
aaagacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19024388 - 19024446
Alignment:
| Q |
1 |
aaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
59 |
Q |
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| T |
19024388 |
aaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 30397397 - 30397437
Alignment:
| Q |
206 |
tgcaatataggttcgtctagaaaacattcctaagaaatacc |
246 |
Q |
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| T |
30397397 |
tgcaatataggttagtctagaaaacagtcttaagaaatacc |
30397437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 48011422 - 48011384
Alignment:
| Q |
134 |
taatgtactttgattcccatgtcatattctctgcctcat |
172 |
Q |
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| T |
48011422 |
taatgtactttgattcccatgtcacatgctctgcctcat |
48011384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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