View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_high_6 (Length: 644)
Name: NF6860_high_6
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 175 - 627
Target Start/End: Complemental strand, 49171496 - 49171044
Alignment:
| Q |
175 |
catcattctactttggacttatttttagtcattcatgcatagtaatacaagtgagttaaaattgaagttttgcacagaaagagaaagcatttcaaattca |
274 |
Q |
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| T |
49171496 |
catcattctactttggacttatttttagtcattcatggatagtaatacaagtgagttaaaattgaagttttgcacagaaaaagaaagcatttcaaattca |
49171397 |
T |
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| Q |
275 |
atacgacccacagagacagaaaattttgcaaatctatttccatccattaattgacacgcaaaaagctttnnnnnnnnnnnntcacaatattttgtaatta |
374 |
Q |
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| T |
49171396 |
atacgacccacagagacagaaaattttgcaaatcaatttccatccattaattgacacgcaaaaagctttaaaaaaaaaaaatcacaatattttgtaatta |
49171297 |
T |
|
| Q |
375 |
ttattgagaaaagtaaaataccatgaagtggtcgagttgtttattatcatcgttatcaagcatgccctgttgtcctaaggcagagtacttggcaacaaca |
474 |
Q |
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| T |
49171296 |
ttattgagaaaagtaaaataccatgaagtggtcgagttgtttattatcatcgttatcaagcatgccctgttgtcctaaggcagagtacttggcaacaaca |
49171197 |
T |
|
| Q |
475 |
ttctgcgactctgccagctgagcatcgatcctgggcaactggtcaaccggcgtggcgattcttaaacacgacacgtgtgctgatagaagctgttcataca |
574 |
Q |
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| T |
49171196 |
ttctgcgactctgccagctgagcatcgatcctgggcaactggtcaaccggcgtggcgattcttaaacacgacacgtgtgctgatagaagctgttcataca |
49171097 |
T |
|
| Q |
575 |
acgggtgcgccattatttcacctttgtgtttcgctttctgccagttcatcact |
627 |
Q |
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| T |
49171096 |
acgggtgcgccattatttcacctttgtgtttcgctttctgccagttcatcact |
49171044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 49171667 - 49171536
Alignment:
| Q |
1 |
tgattaaaagaagaaagtagaaatcaaataaaagacaaactccctacataaaaaacatgccacttaaaataagctcaaaaggtcaagttcatgttaaaac |
100 |
Q |
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| T |
49171667 |
tgattaaaagaagaaagtagaaatcaaataaaagacaaactccctacataaa---catgccacttaaaataagctcaataggtcaatttcatgttaaaac |
49171571 |
T |
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| Q |
101 |
aaactcaaaaggtcaaaattgaaccattagcttcc |
135 |
Q |
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| T |
49171570 |
aaactcaaaaggtcaaaattgaaccattagcttcc |
49171536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 587
Target Start/End: Original strand, 2746462 - 2746604
Alignment:
| Q |
445 |
tgtcctaaggcagagtacttggcaacaacattctgcgactctgccagctgagcatcgatcctgggcaactggtcaaccggcgtggcgattcttaaacacg |
544 |
Q |
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||||| || |||||||| ||||| || |||||||| |||| ||| | ||| ||||| ||||| || ||||| || |||||||| || || || ||||||| |
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| T |
2746462 |
tgtccaaaagcagagtatttggccaccacattctgagactgtgctaactgtgcatcaatcctcggtaactgatccaccggcgttgctatcctcaaacacg |
2746561 |
T |
|
| Q |
545 |
acacgtgtgctgatagaagctgttcatacaacgggtgcgccat |
587 |
Q |
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| T |
2746562 |
ccacatgtgccgacaacaactgttcatacaacggatgtgccat |
2746604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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