View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_high_60 (Length: 242)

Name: NF6860_high_60
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_high_60
NF6860_high_60
[»] chr7 (3 HSPs)
chr7 (11-213)||(44110447-44110649)
chr7 (62-172)||(28008684-28008794)
chr7 (110-172)||(29656739-29656801)
[»] chr3 (3 HSPs)
chr3 (23-175)||(29788393-29788545)
chr3 (12-169)||(3162741-3162898)
chr3 (78-175)||(4095722-4095819)
[»] chr2 (3 HSPs)
chr2 (12-172)||(20529879-20530039)
chr2 (12-170)||(37058797-37058955)
chr2 (41-106)||(18690509-18690574)
[»] scaffold0294 (1 HSPs)
scaffold0294 (12-175)||(930-1092)
[»] chr4 (3 HSPs)
chr4 (42-172)||(12587575-12587705)
chr4 (12-172)||(3510547-3510707)
chr4 (89-175)||(44100390-44100476)
[»] chr1 (2 HSPs)
chr1 (12-175)||(39900023-39900186)
chr1 (79-173)||(26793217-26793311)
[»] chr8 (3 HSPs)
chr8 (44-171)||(37233241-37233368)
chr8 (12-175)||(32109043-32109206)
chr8 (76-173)||(12785395-12785492)
[»] chr5 (1 HSPs)
chr5 (144-173)||(7576372-7576401)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 44110447 - 44110649
Alignment:
Q  11 acatcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44110447 acatcatctggttgaactgcaatctcacggttgagtcgatcaatagacggcgatacccaacgttgtccaccctccctgtgtctctgtggtcaagtcgtcg 44110546  T
Q  111 gttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaatctactagataaatgcccattgatttaaatctacac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44110547 gttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaatctactagataaatgtccattgatttaaatctacac 44110646  T
Q  211 cat 213  Q
    |||    
T  44110647 cat 44110649  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 28008794 - 28008684
Alignment:
Q  62 gatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccg 161  Q
    ||||||||| || ||||||||||  ||||||| |||||| |||| |||||||||||||||  | |||  | || | ||||| ||||||||||| |||| |    
T  28008794 gatacccaatgtcgtccaccctctttgtgtctatgtggttgagttgtcggttgatttgatctagttggtcattcagatctagtaacgtgacattgacctg 28008695  T
Q  162 aaccctgaaca 172  Q
    |||||| ||||    
T  28008694 aaccctaaaca 28008684  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 29656739 - 29656801
Alignment:
Q  110 ggttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaaca 172  Q
    ||||||||||||  | |||| | |||| |||||||||||||||||||||| ||||||||||||    
T  29656739 ggttgatttgatcaagttgatcatttatatctactaacgtgacatcgacctgaaccctgaaca 29656801  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 29788393 - 29788545
Alignment:
Q  23 tgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcggttgatttgatt 122  Q
    ||||||||||||||  |  || ||||||| || |||| |||||||||||||  |||| ||||| |||||||||||||| |||||||  |||||||||||     
T  29788393 tgaactgcaatctcctgactgggtcgatcgatggacgttgatacccaacgtcttccatcctccttgtgtctctgtggttgagtcgtttgttgatttgatc 29788492  T
Q  123 caattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaat 175  Q
     | |||| |||||| |||| ||||||||||||||| || ||||||||||||||    
T  29788493 aagttgatcctttagatcttctaacgtgacatcgatccaaaccctgaacaaat 29788545  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 3162741 - 3162898
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||||||||||||||| |||||  ||| ||| || ||| ||  |||  ||||| ||||  |||||||||||| ||||||| ||||||   ||||||||    
T  3162741 catcatctggttgaactggaatcttccggctgattcaatccatgaacgtcgatactcaacactgtccaccctccttgtgtctatgtggttttgtcgtcgg 3162840  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctga 169  Q
    |||| ||||| || |||| |||| | ||||||||| ||||||||||||| ||||||||    
T  3162841 ttgacttgatccagttgatccttcatatctactaatgtgacatcgacccaaaccctga 3162898  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 4095819 - 4095722
Alignment:
Q  78 caccctccctgtgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaat 175  Q
    |||||||| | ||||| |||||| ||||| |  |||||||| ||||| |||| | || | ||||  ||||||||||||| |||||||| |||||||||    
T  4095819 caccctccttatgtctatgtggttgagtcctttgttgatttcattcagttgatcattcagatcttttaacgtgacatcgtcccgaaccttgaacaaat 4095722  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 20529879 - 20530039
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||||||| |||||||||||||| || ||||||||||| || ||||   |||  ||  || ||||||||||| ||||||||| |||| ||||||||||    
T  20529879 catcatctggatgaactgcaatctctcgattgagtcgatcgatggacgtcaatattcagggtcgtccaccctccttgtgtctctatggttgagtcgtcgg 20529978  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaaca 172  Q
    |||||||||| ||||| | |||| ||||||| ||||||||||| || | ||||| ||||||    
T  20529979 ttgatttgatccaattaatccttcaaatctaataacgtgacattgatctgaaccttgaaca 20530039  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 37058955 - 37058797
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||||| |||||||||||||||| |  |||  |||||| ||  |||  ||||||||||   ||||||||| | |||||||||||||| ||||||||||    
T  37058955 catcatctagttgaactgcaatctcccaattggatcgatcgatgaacgtcgatacccaactccgtccacccttcttgtgtctctgtggttgagtcgtcgg 37058856  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaa 170  Q
    || ||||| |  |  ||| |||| ||||||||| |||||||||| |||| ||| |||||    
T  37058855 tttatttggtctaggtgatccttcaaatctactgacgtgacatctacccaaacgctgaa 37058797  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 18690509 - 18690574
Alignment:
Q  41 ttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtc 106  Q
    |||||||||||||| |||  |||||| ||||  |||||||||||| ||||||| |||||| |||||    
T  18690509 ttgagtcgatcaatggacattgatactcaacactgtccaccctccttgtgtctttgtggttgagtc 18690574  T

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Target: scaffold0294 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 1092 - 930
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||||||| |||||||||||||| ||  ||||||||||||| ||||  |||||||||| ||||||||||| | ||||||| | ||||  |||||| ||    
T  1092 catcatctggatgaactgcaatctcccgactgagtcgatcaatggacgtcgatacccaacattgtccacccttcttgtgtctttatggttaagtcgtagg 993  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaat 175  Q
    || ||||||| |  |||| |||||| |||||||||| |||||||| || |||||| ||||||||    
T  992 ttaatttgatcccgttgatcctttagatctactaacatgacatcg-cctgaaccccgaacaaat 930  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 12587705 - 12587575
Alignment:
Q  42 tgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatct 141  Q
    |||||||||| || |||| ||||||||||| | ||||| ||||| ||| ||| |||||| |||||||| |||||||||||| | |||| | || | ||||    
T  12587705 tgagtcgatcgatggacgttgatacccaacatcgtccatcctccttgtctctttgtggttgagtcgtcagttgatttgatttagttgatcattcagatct 12587606  T
Q  142 actaacgtgacatcgacccgaaccctgaaca 172  Q
    | |||||||||||||||||||||||||||||    
T  12587605 aataacgtgacatcgacccgaaccctgaaca 12587575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 3510547 - 3510707
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||||||| |||| || |||||| ||| ||| |||||| || ||||  |||| |||||   || |||||||| |||||||||||||| |||| ||| |    
T  3510547 catcatctggctgaattgtaatctcccggctgattcgatcgatggacgtcgatatccaacaccgttcaccctccttgtgtctctgtggttgagttgtcag 3510646  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaaca 172  Q
    || |||||| | | |||| |||| | | |||||||| ||||||||||  ||||||||||||    
T  3510647 ttaatttgacttagttgatccttcagaactactaacatgacatcgacatgaaccctgaaca 3510707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 44100476 - 44100390
Alignment:
Q  89 tgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaat 175  Q
    |||||||||||| ||||||| ||||||||| ||  | |||| |||| || |||  |||||||||||||  ||||||| |||||||||    
T  44100476 tgtctctgtggttgagtcgttggttgatttcatcaagttgatccttcaattcttttaacgtgacatcgtaccgaaccttgaacaaat 44100390  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 39900023 - 39900186
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||||||| | ||||| |||||| |||  ||||||||| || |||  ||||| |||||||||| | |||||| ||||||| |||||| |||||||| |    
T  39900023 catcatctggctaaactgaaatctcccggccgagtcgatcgatggacattgataaccaacgttgttcgccctccttgtgtctttgtggttgagtcgtcag 39900122  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaat 175  Q
    || |||||||  |  ||  |||| | ||||||||||||||||| ||||||||||||||||||||    
T  39900123 ttaatttgatcaagctggtccttcatatctactaacgtgacattgacccgaaccctgaacaaat 39900186  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26793311 - 26793217
Alignment:
Q  79 accctccctgtgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaa 173  Q
    ||||||| ||||||||||||||  |||| | | ||||||| ||||| ||||   |||| ||||  ||||||||||||| |||||||| |||||||    
T  26793311 accctccttgtgtctctgtggtttagtctttgcttgatttcattcagttgataatttatatcttttaacgtgacatcgtcccgaaccttgaacaa 26793217  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 37233368 - 37233241
Alignment:
Q  44 agtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatctac 143  Q
    |||||||| || ||||  ||||| |||| ||||||||||||| ||||||| ||||||| ||||| | |||||||| || || |||| | || | |||||     
T  37233368 agtcgatcgatggacgacgatactcaacattgtccaccctccttgtgtctatgtggtcaagtcgccagttgatttaatccagttgatctttcagatctaa 37233269  T
Q  144 taacgtgacatcgacccgaaccctgaac 171  Q
     ||||||||||||||||||| |||||||    
T  37233268 caacgtgacatcgacccgaatcctgaac 37233241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 32109043 - 32109206
Alignment:
Q  12 catcatctggttgaactgcaatctcacggttgagtcgatcaatagacggtgatacccaacgttgtccaccctccctgtgtctctgtggtcgagtcgtcgg 111  Q
    |||||| ||| ||||| |||||||| | | |||||||||| || ||||  |||||| ||| ||||||||   || |  | || |||||| ||||  ||||    
T  32109043 catcatttggctgaaccgcaatctccctgatgagtcgatcgatggacgtcgataccaaacattgtccacatacctttcgcctatgtggttgagttttcgg 32109142  T
Q  112 ttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaaat 175  Q
    |||||||||| || |||| |||||| || |||||| ||||||||||| | ||||||||||||||    
T  32109143 ttgatttgatccagttgatcctttagatatactaaggtgacatcgactcaaaccctgaacaaat 32109206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 12785395 - 12785492
Alignment:
Q  76 tccaccctccctgtgtctctgtggtcgagtcgtcggttgatttgattcaattgaccctttaaatctactaacgtgacatcgacccgaaccctgaacaa 173  Q
    |||||||||  |||||||| ||||| ||||| | ||||||||| || || |||| |||| | ||||  |||  ||||||||||||||||||| |||||    
T  12785395 tccaccctctttgtgtctccgtggttgagtcattggttgatttcatccagttgatccttcagatcttttaatatgacatcgacccgaaccctaaacaa 12785492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 7576372 - 7576401
Alignment:
Q  144 taacgtgacatcgacccgaaccctgaacaa 173  Q
    ||||||||||||||||||||||||||||||    
T  7576372 taacgtgacatcgacccgaaccctgaacaa 7576401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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