View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_10 (Length: 561)
Name: NF6860_low_10
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 106 - 517
Target Start/End: Complemental strand, 14505338 - 14504924
Alignment:
| Q |
106 |
attaaccttcttaatatacatgttaattccttagtgtatatgttcct--tcaatccaatatttgtttatagcatttgatgcttctttttgtttcagtgat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14505338 |
attaaccttcttaatatacatgttaattccttagtgcatatgttcctattcaatccaatatttgtttatagcatttcatgcttctttttgtttcagtgat |
14505239 |
T |
|
| Q |
204 |
ctcatatcaggttgtgaacactaatgcaatgaaattt-ccttcatcatttgtaataaacaaagacccacgttcttctctgacaaaatgtgcaatcaatca |
302 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14505238 |
ctcatatcagattgtgaacactaatgcaatgaaattttccttcatcatttgtaataaacaaagacccacgttcttctctgacaaaatgtgtaatcaatca |
14505139 |
T |
|
| Q |
303 |
tgcatatggaaacctattcagctgtaacatgcatgtctatattccgcagttatacaagaaaatgcatctaaattttgcctttaattaatttccacaacta |
402 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14505138 |
tgcatatagaaacctattcagctgtaacatgcatgtccatattccgcagttatacaagaaaatgcatctaaatattgcctttaattaatttccacaacta |
14505039 |
T |
|
| Q |
403 |
tgcattaaatagaggcactttcccacaataggcttatccacccttcagccttcacgcatgctctctttacctattgacaattgattaattccacaattgt |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14505038 |
tgcattaaatagaggcactttcccacaataggcttatccacccttcagccttcacgcatgcactctttacctattgacaattgattaattccacaattgt |
14504939 |
T |
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| Q |
503 |
cttcaaaattcacta |
517 |
Q |
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||||||||||||||| |
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| T |
14504938 |
cttcaaaattcacta |
14504924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 14506080 - 14506043
Alignment:
| Q |
72 |
atcaaatattcaatttctaactcacatttaacatatta |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
14506080 |
atcaaatattcaatttctaactcacatttaacacatta |
14506043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 38015916 - 38015960
Alignment:
| Q |
22 |
attagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
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| T |
38015916 |
attagatatatgagtcatctcacttatatgttgctcaacatctac |
38015960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 23141766 - 23141823
Alignment:
| Q |
9 |
aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
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| T |
23141766 |
aaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctac |
23141823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 3395423 - 3395480
Alignment:
| Q |
9 |
aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
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|||||||| | | ||||||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
3395423 |
aaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctac |
3395480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 36727617 - 36727661
Alignment:
| Q |
22 |
attagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
| |
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||||| ||||| |||||||||| ||||||||||||||||||||| |
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| T |
36727617 |
attagctatattagtcatctcacatatatgtttcttaacatctac |
36727661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 13228795 - 13228751
Alignment:
| Q |
22 |
attagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||||||| |
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|
| T |
13228795 |
attagatatatgagtcatctcacttatatgtttctcaacatctac |
13228751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 1599798 - 1599741
Alignment:
| Q |
9 |
aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
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|||||||| | | |||||||| || |||||||||| |||||||||||| ||||||||| |
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|
| T |
1599798 |
aaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctac |
1599741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 50331929 - 50331986
Alignment:
| Q |
9 |
aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac |
66 |
Q |
| |
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|||||||| | | |||||||| || |||||||||| |||||||||||| ||||||||| |
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| T |
50331929 |
aaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctac |
50331986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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