View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6860_low_12 (Length: 545)
Name: NF6860_low_12
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 7 - 526
Target Start/End: Complemental strand, 34775281 - 34774762
Alignment:
| Q |
7 |
aatatttatttgtctcccttatattatatctagtcttttttcaaactatattattatggaatagtatttggtgaaaggccaaaacggcattctggaaatt |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34775281 |
aatatttatttgtctaccttatattatatctagtcttttttcaaactatattattatggaatagtatttggtgaaaggccaaaacggcattttggaaatt |
34775182 |
T |
|
| Q |
107 |
gcatataatgaatgttcaaccaaatgtgaaatcagcaagacagttacatcaatttcggttaagtcaacttatggtaaacttgaaggtcttttgttgagag |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34775181 |
gcatataatgaatattcaaccaaatgtgaaatcagcaagacagttacatcaatttcggttaagtcaacttatggtaaacttgaaggtcttttgttgagag |
34775082 |
T |
|
| Q |
207 |
aagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagagtccggcaccttcgatggttgttgcgttttcttggaagcttatacataa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34775081 |
aagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagagtccggcaccttcgatggttgttgcgttttcttggaagcttatacataa |
34774982 |
T |
|
| Q |
307 |
ccgaattccaactagggtgaatcttttgatgagaaacgtccttccacctgaggcccctacgtgttgcgctttatgtgaaagggtggacgaatcatcaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774981 |
ccgaattccaactagggtgaatcttttgatgagaaacgtccttccacctgaggcccctacgtgttgcgctttatgtgaaagggtggacgaatcatcaatt |
34774882 |
T |
|
| Q |
407 |
catctatttctccattgtgaggttgctggtagagtatggcagggtgttatggggtggtgggagaggatgatgttaattccccctaacttcttcatccttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774881 |
catctatttctccattgtgaggttgctggtagagtatggcagggtgttatggggtggtgggagaggatgatgttaattccccctaacttcttcatccttt |
34774782 |
T |
|
| Q |
507 |
gggagtgttggtgcggaggg |
526 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34774781 |
gggagtgttggtgcggaggg |
34774762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 34804527 - 34804465
Alignment:
| Q |
30 |
ttatatctagtcttttttcaaactatattattatggaa-tagtatttggtgaaaggccaaaac |
91 |
Q |
| |
|
||||||||||| | ||||||||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
34804527 |
ttatatctagttgtatttcaaactatattattgtgaaactagtatttggtgaaaggccaaaac |
34804465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 159 - 526
Target Start/End: Complemental strand, 42749313 - 42748948
Alignment:
| Q |
159 |
tttcggttaagtcaacttatggtaaacttgaaggtcttttgttgagagaagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagag |
258 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
42749313 |
tttcggttaagtcaacttatggcaaacttgaagctctattgctgagagaagatttgtggagtatggaggaaaaaggtgttt--agaaaattgtggaagag |
42749216 |
T |
|
| Q |
259 |
tccggcaccttcgatggttgttgcgttttcttggaagcttatacataaccgaattccaactagggtgaatcttttgatgagaaacgtccttccacctgag |
358 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |||| | || |
|
|
| T |
42749215 |
tctggcaccttcgaaggttgttgcgttctcttggaagcttatacataaccaaattccaactagggtgaatctcttggtgagaaacgttcttctgcaggat |
42749116 |
T |
|
| Q |
359 |
gcccctacgtgttgcgctttatgtgaaagggtggacgaatcatcaattcatctatttctccattgtgaggttgctggtagagtatggcagggtgttatgg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
42749115 |
gcccctacgtgttgcgctttatgtgaaagggtggacggatcctcaattcatctttttcttcattgtgaggttgccggtagagtgtggcagggtgttatgg |
42749016 |
T |
|
| Q |
459 |
ggtggtgggagaggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggg |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
42749015 |
ggtggtgggagaggatgatgttaattccccctaacttcttcattctttgggagtgttggagcggaggg |
42748948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 35024697 - 35024641
Alignment:
| Q |
470 |
aggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggg |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35024697 |
aggatgatgttaattccccctaacttcttcatcctttgggagtgttggttcggaggg |
35024641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 206 - 432
Target Start/End: Complemental strand, 12825877 - 12825651
Alignment:
| Q |
206 |
gaagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagagtccggcaccttcgatggttgttgcgttttcttggaagcttatacata |
305 |
Q |
| |
|
|||||||||||||||| |||||| || |||||| | ||| || |||||||| ||| ||||||||| |||||| ||||||||||||||||| || || |
|
|
| T |
12825877 |
gaagatttgtggagtacggaggagaagagtgtttctgccaagttatggaagagcccgacaccttcgaaggttgtagcgttttcttggaagctcctatatg |
12825778 |
T |
|
| Q |
306 |
accgaattccaactagggtgaatcttttgatgagaaacgtccttccacctgaggcccctacgtgttgcgctttatgtgaaagggtggacgaatcatcaat |
405 |
Q |
| |
|
| ||||| | || ||||||||||||| ||||| || || | ||| | || || ||| |||||| | || ||||| | |||||| ||||| ||||| |
|
|
| T |
12825777 |
atcgaatatctacaagggtgaatctttcgatgatgaatgtattaccaacggatgctcctcagtgttgtaccttttgtgagacggtggatgaatcgtcaat |
12825678 |
T |
|
| Q |
406 |
tcatctatttctccattgtgaggttgc |
432 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
12825677 |
tcatctatttcttcattgtgaggttgc |
12825651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 517
Target Start/End: Original strand, 28571536 - 28571679
Alignment:
| Q |
374 |
gctttatgtgaaagggtggacgaatcatcaattcatctatttctccattgtgaggttgctggtagagtatggcagggtgttatggggtggtgggagagga |
473 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||| || || || |||||||| || || ||||| || ||||| ||| ||||| ||||||||||||||| |
|
|
| T |
28571536 |
gctttatgtgaaagggtggatgaatcctcaactcaccttttccttcattgtgatgtagcaggtagggtgtggcaaggtattatgcggtggtgggagagga |
28571635 |
T |
|
| Q |
474 |
tgatgttaattccccctaacttcttcatcctttgggagtgttgg |
517 |
Q |
| |
|
| | |||||||| ||||| || || | | ||||||||||||| |
|
|
| T |
28571636 |
ttctcttaattccgcctaatttatttgtgcattgggagtgttgg |
28571679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 47819822 - 47819914
Alignment:
| Q |
206 |
gaagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagagtccggcaccttcgatggttgttgcgttttcttggaagctt |
298 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||| | ||||| |||||||||||||| | |||||| ||||| |||||||||||| |
|
|
| T |
47819822 |
gaagatttgtggagtgtggaggagaaaggtgtctttgccaagctttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagctt |
47819914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 48156753 - 48156841
Alignment:
| Q |
239 |
tttagcaaattgtggaagagtccggcaccttcgatggttgttgcgttttcttggaagcttatacataaccgaattccaactagggtgaa |
327 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||||| ||||| || || |||||||||||| | || || ||| ||||||||||| |||| |
|
|
| T |
48156753 |
tttagtaatttgtggaagagtctggcgccttcgagagttgtggcattctcttggaagcttcttcacaatcgagttccaactaggatgaa |
48156841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 517
Target Start/End: Original strand, 24189317 - 24189463
Alignment:
| Q |
371 |
tgcgctttatgtgaaagggtggacgaatcatcaattcatctatttctccattgtgaggttgctggtagagtatggcagggtgttatggggtggtgggaga |
470 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| || ||||| |||||||| || || || || || ||||| ||| ||||| ||| | |||||| |
|
|
| T |
24189317 |
tgcgctttatgtgagagggtggatgaatcgtcaattcacctctttcttcattgtgatgtagcgggaagggtgtggcaaggtattatgcggtagggggaga |
24189416 |
T |
|
| Q |
471 |
ggatgatgttaattccccctaacttcttcatcctttgggagtgttgg |
517 |
Q |
| |
|
|||| | ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
24189417 |
ggattctcttaattctgcctaacttgttcgctctttgggagtgttgg |
24189463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 517
Target Start/End: Original strand, 37035351 - 37035479
Alignment:
| Q |
389 |
gtggacgaatcatcaattcatctatttctccattgtgaggttgctggtagagtatggcagggtgttatggggtggtgggagaggatgatgttaattcccc |
488 |
Q |
| |
|
||||| ||||| |||| |||||| |||||||||||||||||||| || || || |||| | | |||||||||||||||||||| | || ||||||| | |
|
|
| T |
37035351 |
gtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggcgtgatattatggggtggtgggagaggtttattgtaattccgc |
37035450 |
T |
|
| Q |
489 |
ctaacttcttcatcctttgggagtgttgg |
517 |
Q |
| |
|
|||| || || || | |||||||||||| |
|
|
| T |
37035451 |
ctaatttatttgtcttatgggagtgttgg |
37035479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 24189115 - 24189235
Alignment:
| Q |
159 |
tttcggttaagtcaacttatggtaaacttgaaggtcttttgttgagagaagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagag |
258 |
Q |
| |
|
|||| ||||||||||| ||||| ||| | || || ||| ||| ||| ||||| ||||||||| | ||| ||| | || ||||||||| | ||||| || |
|
|
| T |
24189115 |
tttctgttaagtcaacatatgggaaattagagggccttgtgtcgagggaagaattgtggagtgagacggataaaagcgtgtttagcaaaatatggaaaag |
24189214 |
T |
|
| Q |
259 |
tccggcaccttcgatggttgt |
279 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
24189215 |
tccggcaccttcgagggttgt |
24189235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University