View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_13 (Length: 544)

Name: NF6860_low_13
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_13
NF6860_low_13
[»] chr6 (21 HSPs)
chr6 (22-538)||(6515900-6516416)
chr6 (22-538)||(6505349-6505862)
chr6 (196-538)||(13035541-13035880)
chr6 (22-538)||(6472842-6473352)
chr6 (54-538)||(6465234-6465712)
chr6 (203-519)||(6526419-6526732)
chr6 (390-534)||(1841692-1841836)
chr6 (55-143)||(6457275-6457363)
chr6 (54-150)||(6526273-6526369)
chr6 (331-525)||(1822092-1822280)
chr6 (54-119)||(6528094-6528159)
chr6 (436-536)||(1838819-1838918)
chr6 (192-279)||(6528229-6528316)
chr6 (37-134)||(1831986-1832083)
chr6 (319-538)||(6520366-6520582)
chr6 (420-538)||(6496934-6497052)
chr6 (193-278)||(6457410-6457495)
chr6 (441-538)||(6457658-6457755)
chr6 (193-278)||(6520629-6520714)
chr6 (318-368)||(6457535-6457585)
chr6 (66-143)||(6496586-6496663)
[»] chr7 (7 HSPs)
chr7 (75-143)||(3754016-3754084)
chr7 (198-281)||(9665358-9665441)
chr7 (54-140)||(46383318-46383404)
chr7 (77-143)||(46383849-46383914)
chr7 (76-145)||(4046155-4046224)
chr7 (319-374)||(9665259-9665314)
chr7 (205-281)||(3753881-3753957)
[»] chr4 (2 HSPs)
chr4 (198-281)||(13536382-13536465)
chr4 (319-374)||(13536283-13536338)
[»] chr1 (1 HSPs)
chr1 (22-95)||(35244261-35244334)


Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 22 - 538
Target Start/End: Complemental strand, 6516416 - 6515900
Alignment:
Q  22 ataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatccta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516416 ataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatccta 6516317  T
Q  122 attgataatgatgatcattatacactccgtctcccaaatcactactaaaaacgaaagcaccttcctcctgtgtaataattcctccccattttttgtcata 221  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516316 attgataatgatgatcattatacgctccgtctcccaaatcactactaaaaacgaaagcaccttcctcctgtgtaataattcctccccattttttgtcata 6516217  T
Q  222 cagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactttttgaatagcgtcaacgnnnnnnnnttct 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  6516216 cagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactttttgaatagcgtcaacgaaaaaaaattct 6516117  T
Q  322 tcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaatat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6516116 tcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaacat 6516017  T
Q  422 cttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatga 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516016 cttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatga 6515917  T
Q  522 atcaccaacaacaccaa 538  Q
    |||||||||||||||||    
T  6515916 atcaccaacaacaccaa 6515900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 22 - 538
Target Start/End: Original strand, 6505349 - 6505862
Alignment:
Q  22 ataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatccta 121  Q
    ||||| ||||||| ||||||||||| |||   |||||| ||||||||||||| |||||| ||||| ||||||||||| ||| | ||||||||||||||||    
T  6505349 ataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaatatccta 6505448  T
Q  122 attgataatgatgatcattatacactccgtctcccaaatcactactaaaaacgaaagcaccttcctcctgtgtaataattcctccccattttttgtcata 221  Q
    | ||| | ||||||||||| || | ||||   || ||||||| || |  | |   ||  ||||  |   | ||||||| ||||||||||||||| |||||    
T  6505449 agtgaaagtgatgatcattgtaaattccgaaaccgaaatcaccaccaccatcattagacccttgtt---gagtaataagtcctccccattttttatcata 6505545  T
Q  222 cagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactttttgaatagcgtcaacgnnnnnnnnttct 321  Q
     |||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| |||| ||||||| |||||| |||| |         |||    
T  6505546 tagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaagtttcttactttttcaatagcatcaaagaagaaaacctct 6505645  T
Q  322 tcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaatat 421  Q
    |||||||||||||| | ||| |||||||||||||| |||| |||||| || ||||| ||  |  ||  | || |||| ||||| ||||||||||||| ||    
T  6505646 tcagctatcaatgcaagcctagctgctcttgcaattaattttccataaaaataagacgattttgtttgttttgttgcagatgagtttaaaccttcaacat 6505745  T
Q  422 cttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatga 521  Q
    ||||  |||| || |||||||||||||   ||||||| ||||||| |||||||||||| |||||||| |  ||||  || || |||||||||||||||||    
T  6505746 ctttagaaagtgatgaaacaatttcattgcgtgattcgtcttttacacctttgcttgagtgccaagtcatggaaacaggttctgttttcaaaatccatga 6505845  T
Q  522 atcaccaacaacaccaa 538  Q
    |||||||||||||||||    
T  6505846 atcaccaacaacaccaa 6505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 196 - 538
Target Start/End: Complemental strand, 13035880 - 13035541
Alignment:
Q  196 ataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctg-actttt 294  Q
    ||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| | |||||||||  | |||||  ||  ||    
T  13035880 ataatacctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaagta-cttcttcacaatt 13035782  T
Q  295 tgaatagcgtcaacgnnnnnnnnttcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgtta 394  Q
     |||| || |||| |         ||||||| |||||||||||||||||| |||||||| ||||||| |||||| ||||||||||| ||  |||   |||    
T  13035781 ggaattgcatcaaggtaattcacctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaaagtaagatgatgtcgttg---tta 13035685  T
Q  395 ttgctgatgaatttaaaccttcaatatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacaga 494  Q
    | | |||||| |||| |||||||| ||||||  |||| |  ||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  13035684 tcggtgatgactttagaccttcaacatctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgcttgtatgccaagttacaga 13035585  T
Q  495 aatcggatcggttttcaaaatccatgaatcaccaacaacaccaa 538  Q
    ||  | |||||||||||||| |||||||||||||||||| ||||    
T  13035584 aacagaatcggttttcaaaagccatgaatcaccaacaactccaa 13035541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 22 - 538
Target Start/End: Complemental strand, 6473352 - 6472842
Alignment:
Q  22 ataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatccta 121  Q
    ||||| |||||||| |||| ||||| |||   |||||| ||| |||||||  |||||||||||||| ||||||||||||||||||| ||||| || ||||    
T  6473352 ataaaatcttccatgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagtaaccta 6473253  T
Q  122 attgataatgatgatcattatacactccgtctcccaaatcactactaaaaacgaaagcaccttcctcctgtgtaataattcctccccattttttgtcata 221  Q
    | |||||||||||||||||||| | ||||   || ||||||  ||    | |   || |||||  |  || || ||||| |||||||||||||| |||||    
T  6473252 aatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtt--tg-gttataatacctccccattttttatcata 6473156  T
Q  222 cagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactttttgaatagcgtcaacgnnnnnnnnttct 321  Q
     |||||||||||||| ||||| |||||||| ||||| || ||  | | |||||||||| |  |  | ||  || |||| || |||| |         |||    
T  6473155 gagaaatccatttccattaaatgttccatcgagccaaggctcggtggattccttcaaatatttcttcacaattggaattgcatcaaggtaattcacctct 6473056  T
Q  322 tcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaatat 421  Q
    || ||||||||||||||||| || || ||||| ||||||| |||||| ||||||||||| |    || |||||| | |||||| |||| ||  |||| ||    
T  6473055 tcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgc---tgttgttatcggtgatgactttagactctcaacat 6472959  T
Q  422 cttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatga 521  Q
    ||||| |||| |  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||||  ||||| |||||||||| ||||||    
T  6472958 cttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagccatga 6472859  T
Q  522 atcaccaacaacaccaa 538  Q
    |||||||||||| ||||    
T  6472858 atcaccaacaactccaa 6472842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 54 - 538
Target Start/End: Original strand, 6465234 - 6465712
Alignment:
Q  54 cttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattatacactccgtct 153  Q
    ||||||||||||||||||   ||||||||||||  ||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||  |    
T  6465234 cttatacttcctaccccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaat 6465333  T
Q  154 cccaaatcactactaaaaacgaaagcaccttcctcctgtgtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaa 253  Q
    || ||||||  || |  | |   ||  ||||  |  || |||| ||||||||||||||||   ||||| |||||||||||||| ||||||||||||||||    
T  6465334 ccaaaatcagcaccagtatcattagacccttgtt--tg-gtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaa 6465430  T
Q  254 gccatggttcaattgtttccttcaaaaagcttctgactttttgaatagcgtcaacgnnnnnnnnttcttcagctatcaatgctaaccttgctgctcttgc 353  Q
    |||| || ||||| ||||||||||||||  | || | |||  ||||  | |||| |         |||||||| ||||| || ||||| || || || ||    
T  6465431 gccaaggctcaatagtttccttcaaaaacttcctaattttcggaatcacatcaaggaaacaaacctcttcagcaatcaaagccaacctagcagccctagc 6465530  T
Q  354 aatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaatatcttttaaaagcgacgaaacaatttcatcatgt 453  Q
    |||||| |  ||||| |||||||| ||| |  | | |   ||||| || ||||| |||||||||| |||||| |||||    |||||||| ||||||||     
T  6465531 aatcaacttgccataaaagtaagacgaattcgtcgct---attgcagacgaattcaaaccttcaacatctttcaaaagaacggaaacaatctcatcatga 6465627  T
Q  454 gattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacaccaa 538  Q
    ||||||||||| | ||| ||  | ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  6465628 gattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacaccaa 6465712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 203 - 519
Target Start/End: Original strand, 6526419 - 6526732
Alignment:
Q  203 ctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactttttgaatagc 302  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| |  |||| |||||| ||||  |    
T  6526419 ctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcac 6526518  T
Q  303 gtcaacgnnnnnnnnttcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgat 402  Q
     |||| |         ||||| ||||||||||| |  ||||| |||||||||||||||| |||||| || ||||||||     ||| | |||||| ||||    
T  6526519 atcaaggaaacaaacctcttccgctatcaatgcaagtcttgcagctcttgcaatcaattttccataaaaataagatga---ttttgtttttattgttgat 6526615  T
Q  403 gaatttaaaccttcaatatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggat 502  Q
    ||||| |  ||||||| ||| ||  |||| |  ||||||||||||||| |  || | ||| | | |||||||||||||||||||||||||||||   |||    
T  6526616 gaattcagtccttcaacatccttacaaagtgctgaaacaatttcatcacgcaatccatctctcacacctttgcttgaatgccaagttacagaaacaagat 6526715  T
Q  503 cggttttcaaaatccat 519  Q
    | |||||||||||||||    
T  6526716 ctgttttcaaaatccat 6526732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 390 - 534
Target Start/End: Complemental strand, 1841836 - 1841692
Alignment:
Q  390 tgttattgctgatgaatttaaaccttcaatatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagtt 489  Q
    ||||||| | ||||| || |||||||||| || ||| ||||| |  |||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  1841836 tgttatttcagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgcttgaatgccaagtt 1841737  T
Q  490 acagaaatcggatcggttttcaaaatccatgaatcaccaacaaca 534  Q
    |  |||    |||||||||||||||||||||||||||||||||||    
T  1841736 atggaagcatgatcggttttcaaaatccatgaatcaccaacaaca 1841692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 6457275 - 6457363
Alignment:
Q  55 ttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata 143  Q
    |||||||| || ||||| ||||||||||||||  ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  6457275 ttatactttcttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattata 6457363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 6526273 - 6526369
Alignment:
Q  54 cttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattatacactccg 150  Q
    ||||||||| ||||||||    |||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||    
T  6526273 cttatactttctaccccaaataggatcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccg 6526369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 525
Target Start/End: Complemental strand, 1822280 - 1822092
Alignment:
Q  331 aatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaatatcttttaaaa 430  Q
    ||||| |||||||| || || ||||||||||  | ||| |||||||| ||| |   || ||||||||| ||||| || | |||||||| |||||| ||||    
T  1822280 aatgccaaccttgcagccctggcaatcaatttactataaaagtaagaagaatt---tgttgttattgcagatgagttcataccttcaacatctttcaaaa 1822184  T
Q  431 gcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatca 525  Q
      |  ||||||||||||| |   ||||||| ||| | |||||||||||||||||||||||| ||||  |||||| ||||||||| ||||||||||    
T  1822183 tagctgaaacaatttcatga---gattcttgtttaacacctttgcttgaatgccaagttacggaaacaggatcgattttcaaaagccatgaatca 1822092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 6528094 - 6528159
Alignment:
Q  54 cttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcc 119  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||| |||||||||    
T  6528094 cttatacttcctaccccaagctggatcaatcttagcaagcacagcaattgcataaacaaaatatcc 6528159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 536
Target Start/End: Complemental strand, 1838918 - 1838819
Alignment:
Q  436 gaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacac 535  Q
    ||||||||||||||||  |||||||| |||| ||  || ||||||||||||| ||||||||   |||||||||||||||||||||||| ||||||| |||    
T  1838918 gaaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcggttttcaaaatccatgaat-accaacagcac 1838820  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 6528229 - 6528316
Alignment:
Q  192 tgtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaa 279  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |||||  | |||||||||    
T  6528229 tgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctccttcaaa 6528316  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 1832083 - 1831986
Alignment:
Q  37 agtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatg 134  Q
    |||||||||| |||   ||||||||  ||||||||   ||||||||||||  ||||||||||||||||| | ||||| |||||||| |||||||||||    
T  1832083 agtgaataggcttgaggcttatactctctaccccaaattggatcaatctttgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatg 1831986  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 538
Target Start/End: Complemental strand, 6520582 - 6520366
Alignment:
Q  319 tcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgttattgctgatgaatttaaaccttcaa 418  Q
    ||||||||||| | |||||||||||| ||||| |||||||| | ||||||  | ||||| || ||  |||||   ||  |||||||||||| | | ||||    
T  6520582 tcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgttgat---atatctgatgaatttagatcctcaa 6520486  T
Q  419 tatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatcca 518  Q
     |||||| ||||| |  ||||||||||| | |||  ||||||  || | ||| ||    |||||||||||||||||||  ||||| |||||||||| |||    
T  6520485 catctttcaaaagtgctgaaacaatttctttatggtattctttcttaacaccatttgaagaatgccaagttacagaaacaggatcagttttcaaaaacca 6520386  T
Q  519 tgaatcaccaacaacaccaa 538  Q
    |||||||||||  |||||||    
T  6520385 tgaatcaccaatgacaccaa 6520366  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 538
Target Start/End: Original strand, 6496934 - 6497052
Alignment:
Q  420 atcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccat 519  Q
    |||||||| ||| || ||||| ||||||||| | |||||||  || | ||| ||| ||||| |||| || ||| |||  ||||| |||| ||||| ||||    
T  6496934 atcttttacaagtgatgaaacgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtttccaaaagccat 6497033  T
Q  520 gaatcaccaacaacaccaa 538  Q
    |||||||||||||||||||    
T  6497034 gaatcaccaacaacaccaa 6497052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 6457410 - 6457495
Alignment:
Q  193 gtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaa 278  Q
    ||||| |||||||||||||||   ||||| ||||| |||||| |||||||||||||||  | |||||| || || |||||||||||    
T  6457410 gtaatgattcctccccattttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgatcgtttccttcaa 6457495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 6457658 - 6457755
Alignment:
Q  441 aatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacaccaa 538  Q
    ||||||||||||  ||||||| || ||||||||| | |||||||| || |||||||  ||||  |||||||| | |||||| || |||||||||||||    
T  6457658 aatttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaa 6457755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 6520714 - 6520629
Alignment:
Q  193 gtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaa 278  Q
    |||| |||||| |||||  |||| ||||| ||||| |||||| |  ||||||||||||||||||| || ||||| |||||||||||    
T  6520714 gtaacaattccaccccaacttttatcatatagaaaaccattttcactaaaagttccatcaagccaaggctcaatagtttccttcaa 6520629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 6457535 - 6457585
Alignment:
Q  318 ttcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccata 368  Q
    |||||||||||||||| | ||||||||||| ||||| ||||||| ||||||    
T  6457535 ttcttcagctatcaatcccaaccttgctgcccttgctatcaattttccata 6457585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 6496586 - 6496663
Alignment:
Q  66 accccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata 143  Q
    ||||||||| |  |||||||||  ||| || ||||||||||||||||| |||||||| |||| |  ||||||||||||    
T  6496586 accccatgcagtgtcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattata 6496663  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 3754084 - 3754016
Alignment:
Q  75 tggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata 143  Q
    ||||||||||||  |||| || |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  3754084 tggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattata 3754016  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 9665441 - 9665358
Alignment:
Q  198 aattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaa 281  Q
    ||||||||||||||| |  |||||||||||||||||| | || ||||||||||||| ||| |||||||| ||||| ||||||||    
T  9665441 aattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaa 9665358  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 46383318 - 46383404
Alignment:
Q  54 cttatacttcctaccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcatt 140  Q
    ||||||||||||||||||    |||||||||||  | ||||||| ||||||||| ||| |||||||||| |||||||||||||||||    
T  46383318 cttatacttcctaccccaaataggatcaatcttggcgagcactgtaattccatagagagaatatcctaaatgataatgatgatcatt 46383404  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 46383849 - 46383914
Alignment:
Q  77 gatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata 143  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||    
T  46383849 gatcaatcttagcaagcac-gcaattccatagagaaaatatcctaaatgatgatgatgatcattata 46383914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 4046155 - 4046224
Alignment:
Q  76 ggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattataca 145  Q
    |||||||| ||  |||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4046155 ggatcaatttttgcaagaactccaattccataaagaaaataacctaaatgataatgatgatcattataca 4046224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 9665314 - 9665259
Alignment:
Q  319 tcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagta 374  Q
    ||||||||||||||||| | ||| ||||||||||||||||||| |||||| |||||    
T  9665314 tcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagta 9665259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 3753957 - 3753881
Alignment:
Q  205 ccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaa 281  Q
    ||||||||||| |||||||  || ||||| || || ||||||||||  | |||||| ||||| ||||||||||||||    
T  3753957 ccccattttttttcatacaagaaaccattccctttgaaagttccattcaaccatggctcaatagtttccttcaaaaa 3753881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 13536465 - 13536382
Alignment:
Q  198 aattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaa 281  Q
    ||||||||||||||| |  |||||||||||||||||| | || ||||||||||||| ||| |||||||| ||||| ||||||||    
T  13536465 aattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaa 13536382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 13536338 - 13536283
Alignment:
Q  319 tcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagta 374  Q
    ||||||||||||||||| | ||| ||||||||||||||||||| |||||| |||||    
T  13536338 tcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagta 13536283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 35244334 - 35244261
Alignment:
Q  22 ataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaagcac 95  Q
    ||||| |||| ||| |||||||||| |||    ||||||||||||||||| | |||||||||||||||||||||    
T  35244334 ataaaatctttcatgagtgaataggcttgagatttatacttcctaccccaagttggatcaatcttaacaagcac 35244261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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