View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_14 (Length: 536)
Name: NF6860_low_14
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 9278312 - 9278821
Alignment:
| Q |
19 |
tgaagttcttgaaaatttcctttcatcaacatgataacatctctagtttctcctaatatgtctaagaatctaaccgggcattctactaactcatcaaccc |
118 |
Q |
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| T |
9278312 |
tgaagttcttgaaaatttcctttcatcaacatgataacatctctagtttctcctaatatgtctaagaatctaaccgggcattctactaactcatcaaccc |
9278411 |
T |
|
| Q |
119 |
atttctcatttttgtgagagaataatgcttgttgggtcattgccaatttcaaaacatcttccatgcacttgtaaacgtttacaagaacatatagaccaaa |
218 |
Q |
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| T |
9278412 |
atttctcatttttgtgagagaataatgcttgttgggtcattgccaatttcaaaacatcttccatgcacttgtaaacgtttacaagaacatatagaccaaa |
9278511 |
T |
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| Q |
219 |
gcaaattgtttcaacttttgaggaagatgatgatgatgacattgcctcatatgatttaaacttgtttagctcctcttgaattttaatcgcgcttggatgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
9278512 |
gcaaattgtttcaacttttgaggaagatgatgatgatgacattgcctcatatgatttaaacttgtttagctcctcttgaattttaattgtgcttggatgt |
9278611 |
T |
|
| Q |
319 |
gatcttgttggtaagctaatagatttaataccataacgacaagaattcttgggtgagagggtagccatagtttcccttttcgtcatagtaaaaaagggtt |
418 |
Q |
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| T |
9278612 |
gatcttgttggtaaactaatagatctaataccataacgacaagatttctttggtgagagggtagccatagtttcccttttcgtcatagtaaaaaagggtt |
9278711 |
T |
|
| Q |
419 |
tatgcctatatatatactaataaagtgtttcttgatcttctagtcatgtttggataagggaattggactaaggagagaacactattatatgtatccttta |
518 |
Q |
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| T |
9278712 |
tatgcctatatatatactaataaagtgtttcttgatcttctagtcatgtgtggagaagggaattggactaaggagagaacactattatatgtatccttta |
9278811 |
T |
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| Q |
519 |
tattatgatg |
528 |
Q |
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| T |
9278812 |
tattatgatg |
9278821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 28536513 - 28536420
Alignment:
| Q |
132 |
gtgagagaataatgcttgttgggtcattgccaatttcaaaacatcttccatgcacttgtaaacgtttacaagaacatatagaccaaagcaaattgtt |
228 |
Q |
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||||||| ||| ||||| | ||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||| |||||||| |||| |
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| T |
28536513 |
gtgagagtatagtgcttctagggtcattgccaatttcaaaaaa-cttccatgcac--gtaaacgtttacaaggacatatagactaaagcaaaatgtt |
28536420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 31508932 - 31508888
Alignment:
| Q |
309 |
gcttggatgtgatcttgttggtaagctaatagatttaataccata |
353 |
Q |
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| T |
31508932 |
gcttggatgtgatcttgttggtaaactaatagatctaacaccata |
31508888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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