View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_15 (Length: 525)
Name: NF6860_low_15
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 13 - 525
Target Start/End: Original strand, 39467603 - 39468115
Alignment:
| Q |
13 |
catcaatcttttcatcaaccttcaatgcatatccgtattctgtgaatttataaaccattgaaatgttatcgatgtaataaatctgagtaaatgtctctta |
112 |
Q |
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| T |
39467603 |
catcaatcttttcatcaaccttcaatgcatatccgtattctgcgaatttataaaccattgaaatgttatcgatgtaataaatctgagtaaatgtctctta |
39467702 |
T |
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| Q |
113 |
acaaattaatattcattgaaagttatgatctttgagaatttaactagagtttaatgagtatgtacagacaatgtaaaaagatctacgcgggtgtctaatc |
212 |
Q |
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| T |
39467703 |
ataaattaatattcattgaaagttatgatctttgagaatttaactagagtttaatgagtatgtacagacaatgtaaaaagatctacgcgggtgtctaatc |
39467802 |
T |
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| Q |
213 |
acatcttaccattatgccatttcaaacagtttgttattctactagatcaaacaccaccataaatatttgcacagtctgatgtgattagacgcgagcgcaa |
312 |
Q |
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| T |
39467803 |
acatcttaccattatgccatttcaaacagtttgttattctactatataaaacatcaccataaatatgtgcacagtctgatgtgattagacgcgagcgcaa |
39467902 |
T |
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| Q |
313 |
aagtttttgtactatatcagtgtatattcattaaactctggtttagctttaatcacagataaaataagatttggaaatagtaacttaccaggagcgatgt |
412 |
Q |
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| T |
39467903 |
aagtttttgtacaatatcagtgtatattcattaaactctggtttagctttaatcacagataaaataagatttggaaatagtaacttaccaggagcgatgt |
39468002 |
T |
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| Q |
413 |
agccataggatccggcaaccatggatactgtttcgttcttctggatcatcatcttggctaacccgaaatctgctatccttgcctcaagatttgcatcaag |
512 |
Q |
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| T |
39468003 |
agccataggatccggcaaccatggatactgtttcgttcttctggatcatcatcttggctaacccgaaatctgctatccttgcctcaagatttgcatcaag |
39468102 |
T |
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| Q |
513 |
cagtatattattt |
525 |
Q |
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| T |
39468103 |
cagtatattattt |
39468115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 391 - 524
Target Start/End: Complemental strand, 30089967 - 30089834
Alignment:
| Q |
391 |
agtaacttaccaggagcgatgtagccataggatccggcaaccatggatactgtttcgttcttctggatcatcatcttggctaacccgaaatctgctatcc |
490 |
Q |
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| T |
30089967 |
agtaactcaccaggggcaatgtatccataggatccggcaatcatggagactgtttcattcttccgaaccatcatcttggctaatccgaaatctgctatcc |
30089868 |
T |
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| Q |
491 |
ttgcctcaagatttgcatcaagcagtatattatt |
524 |
Q |
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| T |
30089867 |
ttgcctcaagatttgcgtcaagaagtatattatt |
30089834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 524
Target Start/End: Original strand, 35781311 - 35781387
Alignment:
| Q |
448 |
ttcttctggatcatcatcttggctaacccgaaatctgctatccttgcctcaagatttgcatcaagcagtatattatt |
524 |
Q |
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| T |
35781311 |
ttcttttgaatcatcatcctcgccaaaccgaaatctgctatccttgcctccaaatttgcgtcaaggagtatgttatt |
35781387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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