View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_17 (Length: 502)
Name: NF6860_low_17
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 32248417 - 32248901
Alignment:
| Q |
1 |
gaagcaacttctacattacctcattgaagggaagttccaaacctcttctcaataaggacaacattccatctcctcctacctcatgggatggaaatttcca |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32248417 |
gaagcaacttctacattacctcattgaagggaaattccaaacctcttctcaataaggacaacattccatctccttctacctcatgggatggaaatttcca |
32248516 |
T |
|
| Q |
101 |
ccctcttctctataaggacaactatgttccagctcttccttctccccatctgaattaaatgttgaaattcaatttgtattactatcaaggtgtatcaaag |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32248517 |
ccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttgtattactatcaa----------ag |
32248606 |
T |
|
| Q |
201 |
atgacttctttacaaagttatagaa---ttcaactcttttgagtttggtcttgttgttgctagttttgttattgaattgcactcttttccttcgtgagga |
297 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32248607 |
atgacttctttacaaagttatagaaatattgaactcttttgagtttggtcttgttgttgctagttttgttattgaattgcactctattccttcgtgagga |
32248706 |
T |
|
| Q |
298 |
tttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagt |
397 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248707 |
tttatcctacttcttgggttttggtctagt-ctcccaagatgtttattgtatttaattatctatcaataaatttgttagtttgttgcaaattatagtagt |
32248805 |
T |
|
| Q |
398 |
gaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactctaaattttgcaaagttgaacatgatgtccatc |
494 |
Q |
| |
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|||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32248806 |
gaattttgggtgttaat-taattaggattaagatatcaagtttttcttctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatc |
32248901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 32236223 - 32236474
Alignment:
| Q |
1 |
gaagcaacttctacattacctcattgaagggaagttccaaacctcttctcaataaggacaacattccatctcctcctacctcatgggatggaaatttcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32236223 |
gaagcaacttctacattacctcattgaagggaaattccaaacctcttctcaataaggacaacattccatctccttctacctcatgggatggaaatttcca |
32236322 |
T |
|
| Q |
101 |
ccctcttctctataaggacaactatgttccagctcttccttctccccatctgaattaaatgttgaaattcaatttgtattactatcaaggtgtatcaaag |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32236323 |
ccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttgtattac----------tatcaaag |
32236412 |
T |
|
| Q |
201 |
atgacttctttacaaagttatagaattcaactcttttgagtttggtcttgttgttgctagtt |
262 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
32236413 |
atgacttctttagaaagttatagaattgaactcatttgagtttggtcttgttgttgctagtt |
32236474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 100 - 487
Target Start/End: Original strand, 32254771 - 32255158
Alignment:
| Q |
100 |
accctcttctctataaggacaactatgttccagctcttccttctccccatctgaattaaatgttgaaattcaatttgtattactatcaaggtgtatcaaa |
199 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
32254771 |
acccccttctctataaggacagctatgttccagctcttccttctcctcatcctaattaaatgttgaaattcaaactgtattaatatcaaggtgtatcaaa |
32254870 |
T |
|
| Q |
200 |
gatgacttctttacaaagttatagaattcaa---------------ctcttttgagtttggtcttgttgttgctagttttgttattgaattgcactcttt |
284 |
Q |
| |
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|| ||||||||| ||||||||||| || | | |||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
32254871 |
gaaaacttctttagaaagttatagatttagatgatggttagttgttttattttgagtttggtc---ttgttgcta-----gttattgaattgcactcttt |
32254962 |
T |
|
| Q |
285 |
tccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgc |
384 |
Q |
| |
|
| |||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
32254963 |
ttcttcatgagcggttatcctacttcttgggttttggtctatcccttccaagatttttattgtatttcttta--tgtcaataaatttgttagggtgttgc |
32255060 |
T |
|
| Q |
385 |
aaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactctaaattttgcaaagttgaaca |
483 |
Q |
| |
|
|||| ||| ||||||||||| |||||| || || |||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
32255061 |
aaatgataggtagtgaattttgggtgtcaactta------attaggatgtcaactttttcttctgatgtccatgcactctaatatttgcaaagttgaaca |
32255154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 315 - 450
Target Start/End: Original strand, 32236485 - 32236620
Alignment:
| Q |
315 |
gttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32236485 |
gttttggtctagtccccccaagatgtttattgtatatctttctctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat |
32236584 |
T |
|
| Q |
415 |
ctaattaggattaggatatcaagtttttcttctaat |
450 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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| T |
32236585 |
ctaattaggattatgatatcaagtttttcttctaat |
32236620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 32254610 - 32254733
Alignment:
| Q |
2 |
aagcaacttctacattacctcattgaagggaagttccaaacctcttctcaataaggacaacattccat---ctcctcctacctcatgggatggaaatttc |
98 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||| |||||||| | ||||||||||||||||| |
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| T |
32254610 |
aagcaactttgacattacctcattgaatggagattccaaccctcttctctataaggacaacattccatcccctcctcctcctacatgggatggaaatttc |
32254709 |
T |
|
| Q |
99 |
caccctcttctctataaggacaac |
122 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
32254710 |
caccctcttctctataaggacaac |
32254733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 23193907 - 23194009
Alignment:
| Q |
70 |
ctcctcctacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctccccatctgaattaaatgttgaaatt |
169 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23193907 |
ctcctcataccttatgggatggaaatttccaacctcttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaatt |
23194006 |
T |
|
| Q |
170 |
caa |
172 |
Q |
| |
|
||| |
|
|
| T |
23194007 |
caa |
23194009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 486
Target Start/End: Original strand, 23202952 - 23203089
Alignment:
| Q |
344 |
ttgtatttctttatctatcaataaatttgttagtttgttgcaaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagttttt |
442 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| ||| ||| ||||||| || | | || ||| ||||||| ||||| | | |
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|
| T |
23202952 |
ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaaccta------gttaggatgtcaagctcat |
23203045 |
T |
|
| Q |
443 |
cttctaatgtccatgcactctaaattttgcaaagttgaacatga |
486 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
23203046 |
catctaatgcccatgcactctaatttttgcaaagttgaacatga |
23203089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 37027724 - 37027682
Alignment:
| Q |
80 |
ctcatgggatggaaatttccaccctcttctctataaggacaac |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
37027724 |
ctcatgggatggaaattttcaccctcttctctatagggacaac |
37027682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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