View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_21 (Length: 460)
Name: NF6860_low_21
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 42186361 - 42185930
Alignment:
| Q |
1 |
cgtgatggttgtacccctactcttgttacttacaattccattttgaatgtttatggcaaaatgggtatgccttggtctcgtgttactaccattttttatt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42186361 |
cgtgatggttatacccctactcttgttacttacaattccattttgaatgtttatggcaaaatgggtatgccttggtctcgtgttactgccattttttatt |
42186262 |
T |
|
| Q |
101 |
ctatgaaaacaaattgagttgttccggatttgtatatttataatacacttatcacttgttgtcgtcaaggttcgttatatgaggaagctgtaaatgtgtt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186261 |
ctatgaaaacaaatggagttgttccggatttgtatatttataatacacttatcacttgttgtcgtcaaggttcgttatatgaggaagctgtaaatgtgtt |
42186162 |
T |
|
| Q |
201 |
tgaccggattaagtctgcggtttttgttcctgatagggttacttataatgcgttattagatgtttttgcgaaggctagacgacccaaagaggctttgcag |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
42186161 |
tgaccggattaagtctgcgggttttgttcctgatagagttacttataatgcgttgttagatgtttttgcgaaggttagacgtcccaaagaggctttgcag |
42186062 |
T |
|
| Q |
301 |
gttcttaaagatatggaaagtaatgacttttctccaactgttattacttacgattcgttgatatctgctcatgttacagggggtttgttgaaggaagcgt |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || |
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| T |
42186061 |
gttcttaaagatatggaaagtaatggcttttctccaaatgttattacttacgattcgttgatatctgctcatgttagaggtggtttgttgaaggaagtgt |
42185962 |
T |
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| Q |
401 |
cacggcttaaagttcagatggtggagaaaggg |
432 |
Q |
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| T |
42185961 |
ctcggcttaaagttcagatggtggagaaaggg |
42185930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 21210002 - 21209543
Alignment:
| Q |
1 |
cgtgatggttgtacccctactcttgttacttacaattccattttgaatgtttatggcaaaatgggtatgccttggtctcgtgttactaccattttttatt |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |
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| T |
21210002 |
cgtgacggttgtacccctactcttgttacttacaattccattttgaatgtttatggcaaaatgggtatgtcttggtctcgtgttactgccatttttgatt |
21209903 |
T |
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| Q |
101 |
ctatgaaaacaaattgagttgttccggatttgtatatttataatacacttatcacttgttgtcgtcaaggttcgttatatgaggaagctgtaaatgtgtt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||| |
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| T |
21209902 |
ctatgaaaacaaatggagttgttccggatttgtatacttataatacacttatcacttgttgtcgccgaggttcgttatatgaggaagttgttaatgtgtt |
21209803 |
T |
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| Q |
201 |
tgaccggattaagtctgcggtttttgttcctgatagggttacttataatgcgttattagatgtttttgcgaaggctagacgacccaaagaggctttgcag |
300 |
Q |
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||| | |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21209802 |
tgatcagattaagtctgcgggttttgttcctgatagggttacttataatgcgttgttagatgtttttgcgaaggctagacgacccaaagaggctttgcag |
21209703 |
T |
|
| Q |
301 |
gttcttaaagatatggaaagtaatgacttttctccaactgttattacttacgattcgttgatatctgctcatgttacagggggtttgttgaaggaagcgt |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| |||| ||||||| | |
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| T |
21209702 |
gttcttaaagatatggaaagtaatggcttttctccaactattattacttacaattcgttgatatctgctcatgttagaggtggttggttggaggaagcat |
21209603 |
T |
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| Q |
401 |
cacggcttaaagttcagatggtggagaaagggattaagccggatggttttacttacacca |
460 |
Q |
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| T |
21209602 |
cccggcttaaagttcagatggtggagaaagggattaagccggatgtttttacttacacca |
21209543 |
T |
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