View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_24 (Length: 453)
Name: NF6860_low_24
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 4198161 - 4198612
Alignment:
| Q |
1 |
ctgggtacagctatgagaaaaatgagttaatgaggtagttaggcagacactgcccttcctggtcccttgtttaaatgcaggttccatccatgtgtgttga |
100 |
Q |
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| T |
4198161 |
ctgggtacagctatgagaaaaatgagttaatgaggtagttaggcagacactgcccttcctggtcccttgtttaaatgcaggttccatccatgtgtgttga |
4198260 |
T |
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| Q |
101 |
tagtagtagtctactagtactcctgtatttttgtgattaatgctactggggtatatagatattattactagtatattgtcaaatgattaggggtatcaca |
200 |
Q |
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| T |
4198261 |
tagtagtagtctactagtactactgtatttttgtgattaatgctactggggtatatagatattattactagtatattgtcaaatgattaggggtatcaca |
4198360 |
T |
|
| Q |
201 |
gtgttatttttggctgaattcagctgtgaaattttgccaattatttggtcaattcttattttggccggtggttagnnnnnnnatgacaaccattcaattg |
300 |
Q |
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| T |
4198361 |
gtgttatttttggctgaattcagctgtgaaattttgccaattatttggtcaattcttattttggccggtggttagtttttttatgacaaccattcaattg |
4198460 |
T |
|
| Q |
301 |
tttaatgaaagatatgtgaatttattgggatgttgataatgtatttttgtgtgatggacacaactcttattatatccgacttctttaatttttatccaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4198461 |
tttaatgaaagatatgtgaatttattgggatgttgataatgtatttttgtgtgatggacacaactcttgttatatccgacttctttaatttttatccaaa |
4198560 |
T |
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| Q |
401 |
atttagtgtggtaggaatacaaagctttcaattaaggattaattgtgtcttg |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4198561 |
atttagtgtggtaggaatacaaagctttcaattaaggattaattgtgtcttg |
4198612 |
T |
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