View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_26 (Length: 424)

Name: NF6860_low_26
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_26
NF6860_low_26
[»] chr3 (6 HSPs)
chr3 (1-420)||(19199002-19199422)
chr3 (54-399)||(6777702-6778048)
chr3 (63-324)||(1596237-1596499)
chr3 (63-324)||(34437781-34438042)
chr3 (179-319)||(21565915-21566054)
chr3 (3-50)||(34437674-34437721)
[»] chr1 (8 HSPs)
chr1 (58-420)||(43782700-43783063)
chr1 (63-324)||(48999782-49000044)
chr1 (58-420)||(45152536-45152899)
chr1 (139-324)||(40553596-40553781)
chr1 (54-420)||(3375894-3376260)
chr1 (139-324)||(33297214-33297399)
chr1 (2-52)||(3375795-3375845)
chr1 (1-50)||(45152954-45153002)
[»] scaffold0018 (1 HSPs)
scaffold0018 (58-407)||(180324-180674)
[»] chr7 (3 HSPs)
chr7 (60-420)||(12627280-12627641)
chr7 (53-301)||(1326840-1327089)
chr7 (139-324)||(38457439-38457624)
[»] chr2 (4 HSPs)
chr2 (54-399)||(31116886-31117232)
chr2 (160-324)||(28035602-28035766)
chr2 (3-50)||(28035925-28035972)
chr2 (2-50)||(31116787-31116835)
[»] scaffold0251 (2 HSPs)
scaffold0251 (59-399)||(16977-17321)
scaffold0251 (3-50)||(16875-16922)
[»] chr4 (11 HSPs)
chr4 (63-394)||(42705139-42705470)
chr4 (139-324)||(39465305-39465486)
chr4 (148-270)||(25147344-25147466)
chr4 (186-324)||(3680780-3680918)
chr4 (173-322)||(32307880-32308029)
chr4 (3-58)||(3681088-3681143)
chr4 (3-50)||(25147612-25147659)
chr4 (3-50)||(32305590-32305637)
chr4 (3-50)||(39465623-39465670)
chr4 (139-176)||(32305774-32305811)
chr4 (6-50)||(42705035-42705079)
[»] chr8 (4 HSPs)
chr8 (54-312)||(37227721-37227980)
chr8 (124-324)||(14096646-14096846)
chr8 (3-50)||(37227623-37227670)
chr8 (147-324)||(15909798-15909975)
[»] chr5 (8 HSPs)
chr5 (63-319)||(13274043-13274300)
chr5 (60-243)||(26653528-26653712)
chr5 (60-243)||(26925113-26925297)
chr5 (139-394)||(2742882-2743137)
chr5 (258-357)||(26648609-26648708)
chr5 (258-357)||(26920194-26920293)
chr5 (139-195)||(21101423-21101479)
chr5 (147-268)||(24209211-24209332)
[»] scaffold0408 (1 HSPs)
scaffold0408 (124-324)||(6988-7188)
[»] chr6 (3 HSPs)
chr6 (139-324)||(6285814-6285999)
chr6 (126-243)||(35014337-35014454)
chr6 (178-268)||(2029728-2029818)
[»] scaffold0007 (2 HSPs)
scaffold0007 (139-210)||(257345-257416)
scaffold0007 (250-324)||(274099-274173)
[»] scaffold0010 (1 HSPs)
scaffold0010 (170-268)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 19199422 - 19199002
Alignment:
Q  1 tgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgagggcatgtagag-aaact 99  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||    
T  19199422 tgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgaggacatgtagagcaaact 19199323  T
Q  100 ctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccacta 199  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| ||||||||     
T  19199322 ctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactgcctaagaacccactc 19199223  T
Q  200 tggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  19199222 tggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgttgtctctcgtacgac 19199123  T
Q  300 ctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggatcattaaatcccttaggaggtttccatcgactcacaagtgggg 399  Q
     |||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  19199122 atccagatgacatgagaatggtccactgaatcaatggcatatctgttgtgtccaagactattaaatcccttaggaggtttccatcgactcacaagcgggg 19199023  T
Q  400 ctagagcatgttcgtactcat 420  Q
    | ||| |||||||||||||||    
T  19199022 caagaacatgttcgtactcat 19199002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 54 - 399
Target Start/End: Complemental strand, 6778048 - 6777702
Alignment:
Q  54 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 152  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  |||||| || | || ||||||||||||||    
T  6778048 aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga 6777949  T
Q  153 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 252  Q
    | |||  ||||||||| ||||||| |||||||||||| ||||| || | |||||||||  ||| || |||  ||| |||||||||||||||  ||| ||     
T  6777948 gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc 6777849  T
Q  253 agcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtcc 352  Q
    |||||||||||| | ||| ||| |||| | || |||||| ||||| ||||||| ||||||| ||||| ||||   || | ||| ||  | ||| ||||||    
T  6777848 agcatatgtccttatagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatgttccaacgaatcgatggcagctctgtagtgtcc 6777749  T
Q  353 aggatcattaaatcccttaggaggtttccatcgactcacaagtgggg 399  Q
    ||||| |  ||| ||| | |||||||||||| |||||||||||||||    
T  6777748 aggattagaaaagccccttggaggtttccattgactcacaagtgggg 6777702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 63 - 324
Target Start/End: Original strand, 1596237 - 1596499
Alignment:
Q  63 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 161  Q
    |||||||| ||| ||| ||||| ||||||||| ||||||   |||||||   || |||||  |||||| || | || ||||||||||||||| |||  ||    
T  1596237 acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga 1596336  T
Q  162 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 261  Q
    ||||||| |||||||  ||||||||||| ||||| || |||||||||||  ||| || |||   ||| ||||||||||||||  |||||| |||||||||    
T  1596337 atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt 1596436  T
Q  262 cctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    ||||||||| ||| |||| | || |||||| ||||||||||||| ||||||| ||| ||||||    
T  1596437 cctgaaagggcgtgatgtgtcgtcgtctcttgtacgacctccaggtgacatgtgaacggtcca 1596499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 63 - 324
Target Start/End: Original strand, 34437781 - 34438042
Alignment:
Q  63 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 161  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || |||||  | |||| || | || ||||||| ||||||| |||||||    
T  34437781 acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga 34437879  T
Q  162 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 261  Q
    |||||||  |||||| |||||||||||| ||||| || ||| || ||||  ||| || ||    | ||| ||||||||||||  |||||| |||||||||    
T  34437880 atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt 34437979  T
Q  262 cctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    ||||||||| ||| |||| | || |||||| ||||| ||||||| ||||||| ||||||||||    
T  34437980 cctgaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 34438042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 21566054 - 21565915
Alignment:
Q  179 gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatg 278  Q
    ||||||||| | ||||| ||  ||||||||||| ||| |||| | |||| ||||||||||||||| ||||||| |||| | ||||||||| | ||  |||    
T  21566054 gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac-agcacacgtcctgaaaaggcgccatg 21565956  T
Q  279 tcttgttgtctctggtacgacctccagatgacatgagaatg 319  Q
    ||| || | | || ||||||||||||| |||||||| ||||    
T  21565955 tctcgtcggcgctcgtacgacctccaggtgacatgacaatg 21565915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta 34437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 58 - 420
Target Start/End: Original strand, 43782700 - 43783063
Alignment:
Q  58 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 156  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   | |||||||||| ||||||| || || |||||||||||||||||||||||||     
T  43782700 agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca 43782799  T
Q  157 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 256  Q
    |||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||    
T  43782800 tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca 43782899  T
Q  257 tatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccagga 356  Q
    |||||| ||||||| |||||||||| ||  ||||| ||| ||||||||||||||||||||||||||||   || ||||| ||| | ||| ||||||||||    
T  43782900 tatgtcgtgaaagggcgtaatgtctcgtcatctctcgtatgacctccagatgacatgagaatggtccatcgaatcaatgacatctctgtagtgtccagga 43782999  T
Q  357 tcattaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 420  Q
    |||  ||| ||| | |||||||||||| ||  |||||| ||||| |||||| | ||||| ||||    
T  43783000 tcaaaaaagcccctgggaggtttccattgatccacaagcggggcaagagcaggctcgtaatcat 43783063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 63 - 324
Target Start/End: Complemental strand, 49000044 - 48999782
Alignment:
Q  63 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 161  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||||||  ||| |||||  | |||| || | || ||||||||||||||| |||||||    
T  49000044 acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga 48999945  T
Q  162 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 261  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |||||||||||||||||||  |||||| |||||||||    
T  48999944 atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt 48999845  T
Q  262 cctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    ||||||||| ||| |||| | || |||||| ||||||||||||| ||||||| ||||||||||    
T  48999844 cctgaaagggcgtgatgtgtcgtcgtctctcgtacgacctccaggtgacatgtgaatggtcca 48999782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 58 - 420
Target Start/End: Complemental strand, 45152899 - 45152536
Alignment:
Q  58 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 156  Q
    ||||||||| ||||| | ||||||||  ||||||||| ||||||   |||||||||||| || ||| ||| || |||||||||||||||||||||| |||    
T  45152899 agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc 45152800  T
Q  157 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 256  Q
    | |||| ||||| ||||||| || ||||||||| ||||| || | |||||| |   |||| | ||| ||||||||||||||||||||| |||||| | ||    
T  45152799 taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca 45152700  T
Q  257 tatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccagga 356  Q
    |||||||||||||| ||| |||| |  | ||||||  |||||| |||||||||||||| |||||||||   || ||||| ||| | ||| |||||| |||    
T  45152699 tatgtcctgaaagggcgtgatgtgtcatcgtctctcatacgacatccagatgacatgaaaatggtccaacgaatcaatgacatgtctgtagtgtccggga 45152600  T
Q  357 tcattaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 420  Q
    ||| |||| ||  | | |||||||||| |||||||||| ||||  |||||| | ||||||||||    
T  45152599 tcagtaaaacctctggtaggtttccattgactcacaagcggggtaagagcagggtcgtactcat 45152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 139 - 324
Target Start/End: Original strand, 40553596 - 40553781
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 238  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||| || |||   |||||||||||||    
T  40553596 caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat 40553695  T
Q  239 ccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    |||||  |||||| |||||||||| ||||||| ||| |||| | || |||||| ||||||||||||  ||||||| ||||||||||    
T  40553696 ccatccggagtaccagcatatgtcatgaaagggcgtgatgtgtcgtcgtctctcgtacgacctccaagtgacatgtgaatggtcca 40553781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 54 - 420
Target Start/End: Original strand, 3375894 - 3376260
Alignment:
Q  54 aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 152  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||   ||||| |||||| || ||| ||| |  |||||||||||| |||||||||    
T  3375894 aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga 3375992  T
Q  153 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 252  Q
    |  ||||||  ||||| |||||||  ||| ||||||| ||||| || |||||||||||  ||| || ||| | | ||||||||||||||||  ||||||     
T  3375993 gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc 3376092  T
Q  253 agcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtcc 352  Q
    |  ||||||||||||||| ||  |||||| || |||||| ||||| |||||| |||||||||||||| |||| | || || || |||   ||| ||||||    
T  3376093 aaaatatgtcctgaaagggcgccatgtctcgtcgtctctcgtacggcctccaaatgacatgagaatgctccaatgaatcattggcatcactgtggtgtcc 3376192  T
Q  353 aggatcattaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 420  Q
    |||||||  ||| ||  | |||||||||||| ||  |||||| ||||| |||||| | ||| ||||||    
T  3376193 aggatcagaaaagccactgggaggtttccattgatccacaagcggggcaagagcaaggtcgcactcat 3376260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 324
Target Start/End: Original strand, 33297214 - 33297399
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 238  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || |||||||||||  ||| || |||   || ||||||||||    
T  33297214 caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat 33297313  T
Q  239 ccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    |||||  |||||| |||||||||||||||| | ||| |||| | || |||||| ||||| ||||||| ||||||| ||||||||||    
T  33297314 ccatccggagtaccagcatatgtcctgaaatggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 33297399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
Q  2 gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca 52  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca 3375845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45153002 - 45152954
Alignment:
Q  1 tgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  45153002 tgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta 45152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 58 - 407
Target Start/End: Original strand, 180324 - 180674
Alignment:
Q  58 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 156  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   ||||| |||||| | ||||||||||  |||||||||||||| |||||||||||    
T  180324 agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc 180423  T
Q  157 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 256  Q
    |||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| |||||||||||||||  |||||| | ||    
T  180424 tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca 180523  T
Q  257 tatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccagga 356  Q
    |||||||||||||| | |||||||| || |||||| ||||   ||||| ||||||||||||  ||||| |||| ||||| ||  ||||| ||||||| ||    
T  180524 tatgtcctgaaagggcataatgtctcgtcgtctctcgtacagtctccatatgacatgagaactgtccaataaatcaatgacacctatgtagtgtccaaga 180623  T
Q  357 tcattaaatcccttaggaggtttccatcgactcacaagtggggctagagca 407  Q
    ||| |||||||||| ||| |||||||| |||||||||| ||||| ||||||    
T  180624 tcactaaatcccttgggatgtttccattgactcacaagcggggcaagagca 180674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 60 - 420
Target Start/End: Complemental strand, 12627641 - 12627280
Alignment:
Q  60 atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 158  Q
    |||||||||||  || ||||||||| |||||||||||| |||   |||||||||||| ||  || ||| || || || ||||||||||||||||||||||    
T  12627641 atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg 12627542  T
Q  159 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcata 258  Q
    |||| ||||| | |||||  ||||||| ||| |||||||| |||||||||||  ||| || ||| |||||||||||||||||||||||||||| | ||||    
T  12627541 ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata 12627442  T
Q  259 tgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggatc 358  Q
    |||||| ||||| ||| |||| | ||  || || ||||||||| ||||||||||||||||| |||| | || ||||| ||| | ||| ||||| ||||||    
T  12627441 tgtcctaaaagggcgtcatgtgtcgtcatcactcgtacgaccttcagatgacatgagaatgctccaatgaatcaatgacatctctgtagtgtctaggatc 12627342  T
Q  359 attaaatcccttaggaggtttccatcgactcacaagtggggctagagcatgttcgtactcat 420  Q
    |  ||||||| | ||||||||| || ||  |||||| ||||| |||||| | ||||||||||    
T  12627341 agaaaatcccctgggaggtttcgattgatccacaagcggggcaagagcagggtcgtactcat 12627280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 301
Target Start/End: Original strand, 1326840 - 1327089
Alignment:
Q  53 aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg 151  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||   ||||||| || | || ||||||| ||  ||||||||||||||||||||    
T  1326840 aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg 1326939  T
Q  152 aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 251  Q
    |||| || ||| | | | ||||||| | |||||||||| | |||  | |||||||||||  |||||||||| | ||| ||||||||||||||  ||||||    
T  1326940 aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac 1327039  T
Q  252 tagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacct 301  Q
     | ||||||||||||||||  ||||||||| || |||||| |||||||||    
T  1327040 caacatatgtcctgaaagggtgtaatgtctcgtcgtctctcgtacgacct 1327089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 324
Target Start/End: Complemental strand, 38457624 - 38457439
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 238  Q
    |||||||||||||||  |||||||||||||  | |||| |||||||||||| |||| ||| |||||||||||  ||| || |||   |||||||||||||    
T  38457624 caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat 38457525  T
Q  239 ccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    |||||  |||||| |||||||||||||||||| | | |||| | || |||||| ||||| ||||||| ||||||| ||||||||||    
T  38457524 ccatccggagtaccagcatatgtcctgaaagggcatgatgtgtcgtcgtctctcgtacgtcctccaggtgacatgtgaatggtcca 38457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 54 - 399
Target Start/End: Original strand, 31116886 - 31117232
Alignment:
Q  54 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 152  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||| |||||||  ||||| |   || |||||  ||||||||||||||  |||||||||||||    
T  31116886 aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga 31116985  T
Q  153 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 252  Q
    ||||||||    |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || |||||||||||||||   |||||     
T  31116986 ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc 31117085  T
Q  253 agcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtcc 352  Q
    ||||||| ||||||||||   | |||  | ||  ||||| ||||| |||||||||||||  |||||||||||  ||| ||||| ||| | ||| ||||||    
T  31117086 agcatatatcctgaaagggtctgatgcgtcgtcttctctcgtacggcctccagatgacacaagaatggtccaacaaatcaatggcatctctgtagtgtcc 31117185  T
Q  353 aggatcattaaatcccttaggaggtttccatcgactcacaagtgggg 399  Q
    ||||| |  ||| ||| | |||||||||||| |||||||||| ||||    
T  31117186 aggattagaaaagcccctgggaggtttccattgactcacaagcgggg 31117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 324
Target Start/End: Complemental strand, 28035766 - 28035602
Alignment:
Q  160 gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatat 259  Q
    ||||||||| ||||||| | |||||||||| ||||| || | |||||||||  ||| || |||   |||||||||||||| |||  |||||| |||||||    
T  28035766 gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat 28035667  T
Q  260 gtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    ||| ||||||| ||| |||| |||| |||||| ||||| ||||||| ||||||| ||||||||||    
T  28035666 gtcttgaaagggcgtgatgtgttgtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 28035602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta 28035925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 31116787 - 31116835
Alignment:
Q  2 gtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    |||||||||||||| |||| || |||||| |||||||||||||||||||    
T  31116787 gtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 31116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 399
Target Start/End: Original strand, 16977 - 17321
Alignment:
Q  59 gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg 154  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||  ||| | | |||  |||||| || | ||  ||||||||||||||     
T  16977 gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc 17076  T
Q  155 cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactag 254  Q
    ||| |||||||||| ||||||| |||||| ||||| ||||| || ||| |||||||  ||| || |||   ||| |||||||||||||| ||||||| ||    
T  17077 cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag 17176  T
Q  255 catatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccag 354  Q
    ||||||||||||||||  || |||| | || |||||| ||||| ||||||  ||||||| ||||||||||  ||| ||||| ||  | ||| ||||||||    
T  17177 catatgtcctgaaagggtgtgatgtgtcgtcgtctctcgtacggcctccaagtgacatgtgaatggtccaacaaatcaatggcagctctgtagtgtccag 17276  T
Q  355 gatcattaaatcccttaggaggtttccatcgactcacaagtgggg 399  Q
    ||| |  ||| ||| | |||||||||||| |||||||||| ||||    
T  17277 gattagaaaagcccctgggaggtttccattgactcacaagcgggg 17321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 16875 - 16922
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 16922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 394
Target Start/End: Original strand, 42705139 - 42705470
Alignment:
Q  63 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 161  Q
    |||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  ||| || || | || ||||||||||||||| |||||||    
T  42705139 acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga 42705238  T
Q  162 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 261  Q
    ||||| | ||||| | |||||||||||| ||||| || |||||||||||  ||| || |||   ||||| ||||||||||||  |||||| | |||||||    
T  42705239 atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt 42705338  T
Q  262 cctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggatcatt 361  Q
    ||||||||| ||| |||| | || |||||| ||||| ||||||| ||||||| ||||||||||  ||| | ||| ||  | ||| ||||| ||||| ||     
T  42705339 cctgaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtccaacaaatcgatggcagctctgtagtgtcgaggattata 42705438  T
Q  362 aaatcccttaggaggtttccatcgactcacaag 394  Q
    ||||||| | |||||||||||| || |||||||    
T  42705439 aaatcccct-ggaggtttccattgaatcacaag 42705470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 324
Target Start/End: Complemental strand, 39465486 - 39465305
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 238  Q
    |||||||||||| || |||| ||||||||  ||||||| | |||||||||| ||||  || |||||||| ||  ||| || |||   |||||||||||||    
T  39465486 caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat 39465389  T
Q  239 ccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    |||||  ||||||||||||||||||||||||| ||| |||||  || |||||| ||||| ||||||| ||||||| ||||||||||    
T  39465388 ccatccggagtactagcatatgtcctgaaagggcgtgatgtc--gtcgtctctcgtacggcctccaggtgacatgtgaatggtcca 39465305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
Q  148 taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga 247  Q
    |||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || |||   ||||||||||||||||||  ||    
T  25147466 taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga 25147367  T
Q  248 gtactagcatatgtcctgaaagg 270  Q
    |||| ||||||||||||||||||    
T  25147366 gtaccagcatatgtcctgaaagg 25147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 3680918 - 3680780
Alignment:
Q  186 ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgtt 285  Q
    |||| ||||| || |||||||||||  ||| ||||||   ||||||||||||||||||  ||||||||| || |||||| ||||| ||| |||| | ||     
T  3680918 ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgtgtcgtc 3680819  T
Q  286 gtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    |||||| ||||| ||||||| ||||||| ||||||||||    
T  3680818 gtctctcgtacggcctccaggtgacatgtgaatggtcca 3680780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 32307880 - 32308029
Alignment:
Q  173 atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggac 272  Q
    |||| |||||||||||| ||||| ||  ||||||||||  ||| || |||   || |||||||||||||||  |||||| |||||||||||| ||||| |    
T  32307880 atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc 32307979  T
Q  273 gtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtc 322  Q
    || |||| | || |||||| ||||||| ||||| ||||||| ||||||||    
T  32307980 gtgatgtgtcgtcgtctctcgtacgacttccaggtgacatgtgaatggtc 32308029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta 58  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||    
T  3681143 tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta 3681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 25147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactcta 32305637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 39465623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatac 176  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32305774 caatgtctgtaggagccctgggaatagtctggacatac 32305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
Q  6 tcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    |||||||||| |||| || |||||| |||||||||||||||||||    
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactcta 42705079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 312
Target Start/End: Original strand, 37227721 - 37227980
Alignment:
Q  54 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 152  Q
    |||| ||| |||||| || || ||||||||| ||||||||| |||||| | |||||||   || |||||  | |||| || | || ||||||||||||||    
T  37227721 aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga 37227820  T
Q  153 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 252  Q
    | |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||   ||| || |||   || |||||||||||||||  |||||||    
T  37227821 gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact 37227920  T
Q  253 agcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacat 312  Q
    |||||||||||| ||||| ||| |||| | || |||||| ||||| ||||||| ||||||    
T  37227921 agcatatgtcctaaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacat 37227980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 324
Target Start/End: Complemental strand, 14096846 - 14096646
Alignment:
Q  124 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 223  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  14096846 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 14096747  T
Q  224 tttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcc 323  Q
      || |||||||||||||||| |||||||||| |||||||||||||| | | |||| | || |||||| |||||  |||||  |||||||||||||||||    
T  14096746 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagggcattatgtgtcgtcgtctctcgtacggtctccaagtgacatgagaatggtcc 14096647  T
Q  324 a 324  Q
    |    
T  14096646 a 14096646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
Q  3 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 50  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 37227670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 324
Target Start/End: Original strand, 15909798 - 15909975
Alignment:
Q  147 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 246  Q
    |||||||| |||||| | ||||  ||||| | ||||||||| | ||||| ||   |||||||||  | | || ||| |||| || ||||||||||||  |    
T  15909798 gtaggaggtctgggattggtctgaacatagttgtactgcctcagaaccctctcctgcaagtgacgcatcatcatgtctttgtcgtccatgatccatccgg 15909897  T
Q  247 agtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    ||||| |||||| ||||||||| |  || |||||| || ||  ||  ||||| |||||||||||||||||||| ||||    
T  15909898 agtaccagcatacgtcctgaaatggtgtcatgtctcgtcgttgctcatacgatctccagatgacatgagaatgctcca 15909975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 319
Target Start/End: Complemental strand, 13274300 - 13274043
Alignment:
Q  63 acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 161  Q
    |||||| ||||| ||||||||| |||||||||||| ||||| |||||||   || |||||  |  ||| || | || ||||| ||||||||| |||||||    
T  13274300 acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga 13274201  T
Q  162 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 261  Q
    ||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||  || |||   ||||||||||||||||||| |||||| |||||||||    
T  13274200 atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt 13274101  T
Q  262 cctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatg 319  Q
    ||| ||||  ||| |||| | |  |||||| ||||| ||||||| ||||||| |||||    
T  13274100 cctaaaagagcgtgatgtgtcgccgtctctcgtacggcctccaggtgacatgtgaatg 13274043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
Q  60 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 158  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26653712 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26653613  T
Q  159 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 243  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26653612 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
Q  60 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 158  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26925297 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26925198  T
Q  159 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 243  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26925197 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 139 - 394
Target Start/End: Complemental strand, 2743137 - 2742882
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 238  Q
    ||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || |||||||   ||| || |||   |||||| ||||||    
T  2743137 caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat 2743038  T
Q  239 ccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtca 338  Q
    |||||  |||||| |||||||||||||||||| ||| |||| | || |||||| ||||| ||||||| ||||||| ||||||||||   || | ||| ||    
T  2743037 ccatccggagtaccagcatatgtcctgaaagggcgtgatgtgtcgtcgtctctcgtacggcctccaggtgacatgtgaatggtccaacgaatcgatggca 2742938  T
Q  339 tatatgttgtgtccaggatcattaaatcccttaggaggtttccatcgactcacaag 394  Q
     || ||| ||||||||||| |  ||| ||| | |||||||||||| || |||||||    
T  2742937 gatctgtagtgtccaggattagaaaagccccttggaggtttccattgaatcacaag 2742882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 26648708 - 26648609
Alignment:
Q  258 atgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggat 357  Q
    ||||||||||| | |||||||||| || |||||| |||||||||||||||||||||||||||||||| | || ||||| ||| | ||| |||||||||||    
T  26648708 atgtcctgaaaaggcgtaatgtctcgtcgtctctcgtacgacctccagatgacatgagaatggtccagtgaatcaatggcatctttgtagtgtccaggat 26648609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 26920293 - 26920194
Alignment:
Q  258 atgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtccactaaaacaatgtcatatatgttgtgtccaggat 357  Q
    ||||||||||| | |||||||||| || |||||| |||||||||||||||||||||||||||||||| | || ||||| ||| | ||| |||||||||||    
T  26920293 atgtcctgaaaaggcgtaatgtctcgtcgtctctcgtacgacctccagatgacatgagaatggtccagtgaatcaatggcatctttgtagtgtccaggat 26920194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc 195  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  21101479 caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc 21101423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
Q  147 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 246  Q
    |||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || |||||||||||    | || ||| |||| ||| |||||||||||  |    
T  24209211 gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg 24209310  T
Q  247 agtactagcatatgtcctgaaa 268  Q
    ||||| ||||||||||| ||||    
T  24209311 agtaccagcatatgtcccgaaa 24209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 324
Target Start/End: Complemental strand, 7188 - 6988
Alignment:
Q  124 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 223  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  7188 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 7089  T
Q  224 tttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcc 323  Q
      || |||||||||||||||| |||||||||| |||||||||||||| | | |||| | || |||||| |||||  |||||  |||||||||||||||||    
T  7088 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagggcattatgtgtcgtcgtctctcgtacggtctccaagtgacatgagaatggtcc 6989  T
Q  324 a 324  Q
    |    
T  6988 a 6988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 324
Target Start/End: Original strand, 6285814 - 6285999
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 238  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || ||||||||  ||| || | |   |||  ||||||||    
T  6285814 caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat 6285913  T
Q  239 ccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    |||||| |||||| |||||||||||| ||||| ||| |||| | || || ||| ||||| ||||||  ||||||| ||||||||||    
T  6285914 ccatctggagtaccagcatatgtcctcaaagggcgtgatgtgtcgtcgtgtctcgtacggcctccaagtgacatgtgaatggtcca 6285999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
Q  126 gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt 225  Q
    ||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |    
T  35014454 gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt 35014355  T
Q  226 tgccggccatgatccatc 243  Q
    ||||| ||||||||||||    
T  35014354 tgccgaccatgatccatc 35014337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 2029818 - 2029728
Alignment:
Q  178 cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 268  Q
    |||||||||| | ||||| || |||||||||||  ||| |||| | |||||||||||||||||||| ||| ||| |||| | |||||||||    
T  2029818 cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatccagaataccagcacacgtcctgaaa 2029728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 257345 - 257416
Alignment:
Q  139 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac 210  Q
    |||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || |||||||||||    
T  257345 caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac 257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 274099 - 274173
Alignment:
Q  250 actagcatatgtcctgaaaggacgtaatgtcttgttgtctctggtacgacctccagatgacatgagaatggtcca 324  Q
    ||||||||||||||||||||| ||| |||| | || |||||| ||||| ||||||| ||||||  ||||||||||    
T  274099 actagcatatgtcctgaaagggcgtcatgtgtcgtcgtctctcgtacggcctccaggtgacatttgaatggtcca 274173  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 32353 - 32451
Alignment:
Q  170 gacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 268  Q
    |||||||  ||||| ||||| ||||| || |||||||||||  ||| || ||| | ||  ||||||||||||||| |||||| ||||||||||||||||    
T  32353 gacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctgttggccatgatccatctggagtaccagcatatgtcctgaaa 32451  T

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