View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_29 (Length: 407)
Name: NF6860_low_29
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 37640378 - 37640193
Alignment:
| Q |
1 |
atcggtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatgggaaacgatcgtagccggcgatggtttgggcgggaacggccatagcc |
100 |
Q |
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| T |
37640378 |
atcggtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatgggaaacgatcgtagccggcgatggtttgggcgggaacggccatagcc |
37640279 |
T |
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| Q |
101 |
atcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaatgcatggggttgtttgtgtttatgtaatca |
186 |
Q |
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| T |
37640278 |
atcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaatgcatggggttgtttgtgtttatgtaatca |
37640193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 214 - 398
Target Start/End: Complemental strand, 37640165 - 37639968
Alignment:
| Q |
214 |
atattaaaaaattagagtcaaaaattttaatccatgtacaccatggtgttgtgttgtgccaaaggtttgctacaccaccacttcta-------------t |
300 |
Q |
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| T |
37640165 |
atattaaaaaattagagtcaaacattttaatccatgtacaccatggtgttgtgttgtgccaaaggtttgctacaccaccacttctactatttttacatct |
37640066 |
T |
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| Q |
301 |
ggtcgcgatagtttcagattaaaatattcatggcgttttggaatatgactaaaaaataatgtgaattcgagtcttgaactgaggaagatgatgaacat |
398 |
Q |
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| T |
37640065 |
ggtcgcaatagtttcagattaaaatattcatggcgttttggaatatggctaaaaaataatgtaaattcgagtcttgaactgaggaagatgatgaacat |
37639968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 2156968 - 2157140
Alignment:
| Q |
5 |
gtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatgggaaacgatcgtagccggcgatggtttgggcgggaacggccatagccatca |
104 |
Q |
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| T |
2156968 |
gtgttgttcagcaaagctgagttggtttggcgaagaatcacgtcccatggaaaacgatcgtcaccgacgaag-tttgggcgggaacgggcatagccatca |
2157066 |
T |
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| Q |
105 |
aacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaatgcatggggttgtttgtgtttat |
179 |
Q |
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| T |
2157067 |
aacaaaacgagagaaacgcgagagagtaagagtgttcagaggtcaatgacaatgcatgggg-tgtttgtgcttat |
2157140 |
T |
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